Analysis of interatomic Contacts of Structural Units in PDB entry:
2JA9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JA9 entry

There is 1 chain in PDB entry 2JA9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 62THR 236
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 5 helices in PDB entry 2JA9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
159 169Right-handed alpha
Helix 2
2
A
173 180Right-handed alpha
Helix 3
3
A
200 218Right-handed alpha
Helix 4
4
A
219 221Right-handed 310
Helix 5
5
A
222 231Right-handed alpha
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There are 2 sheets in PDB entry 2JA9. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 79first strand
Strand 2
A
118 125anti-parallel
Strand 3
A
133 135anti-parallel
Strand 4
A
95 98parallel
Strand 5
A
83 87anti-parallel
Strand 6
A
71 79anti-parallel
Strand 7
A
118 125anti-parallel
Strand 8
A
71 79anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 157first strand
Strand 2
A
193 197anti-parallel
Strand 3
A
185 189anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il