Analysis of interatomic Contacts of Structural Units in PDB entry:
2JAA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JAA entry

There are 2 chains in PDB entry 2JAA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 128SER 320
B
 LEU 123SER 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2JAA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
131 149Right-handed alpha
Helix 2
2
A
149 174Right-handed alpha
Helix 3
3
A
193 206Right-handed alpha
Helix 4
4
A
221 231Right-handed alpha
Helix 5
5
A
250 258Right-handed alpha
Helix 6
6
A
278 317Right-handed alpha
Helix 7
7
B
130 149Right-handed alpha
Helix 8
8
B
149 175Right-handed alpha
Helix 9
9
B
191 206Right-handed alpha
Helix 10
10
B
219 231Right-handed alpha
Helix 11
11
B
250 260Right-handed alpha
Helix 12
12
B
275 317Right-handed alpha
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There are 3 sheets in PDB entry 2JAA. Click on sheet of interest to get list of strands forming it: AA, BA, BB,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
A
243 248anti-parallel
Strand 3
A
235 240anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 179first strand
Strand 2
B
189 190anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 212first strand
Strand 2
B
243 248anti-parallel
Strand 3
B
235 240anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il