Analysis of interatomic Contacts of Structural Units in PDB entry:
2JAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JAD entry

There are 2 chains in PDB entry 2JAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PHE 64
A
 LEU 68LEU 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2JAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
3 9Right-handed 310
Helix 2
2
A
56 61Right-handed 310
Helix 3
3
A
68 72Right-handed 310
Helix 4
4
A
78 81Right-handed 310
Helix 5
5
A
82 87Right-handed alpha
Helix 6
6
A
231 239Right-handed alpha
Helix 7
7
A
249 262Right-handed alpha
Helix 8
8
A
273 285Right-handed alpha
Helix 9
9
A
300 302Right-handed 310
Helix 10
10
A
304 317Right-handed alpha
Helix 11
11
A
333 343Right-handed alpha
Helix 12
12
A
344 354Right-handed alpha
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There are 2 sheets in PDB entry 2JAD. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 13 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
12 22first strand
Strand 2
A
25 36anti-parallel
Strand 3
A
41 48anti-parallel
Strand 4
A
217 227anti-parallel
Strand 5
A
199 208anti-parallel
Strand 6
A
148 155anti-parallel
Strand 7
A
160 170anti-parallel
Strand 8
A
176 187anti-parallel
Strand 9
A
92 100anti-parallel
Strand 10
A
105 115anti-parallel
Strand 11
A
118 128anti-parallel
Strand 12
A
12 22parallel
Strand 13
A
12 22first strand
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 298first strand
Strand 2
A
265 269parallel
Strand 3
A
323 326anti-parallel
Strand 4
A
329 332anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il