Analysis of interatomic Contacts of Structural Units in PDB entry:
2JAH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JAH entry

There are 4 chains in PDB entry 2JAH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 3VAL 247
B
 SER 3VAL 247
C
 PRO 2VAL 247
D
 SER 3VAL 247
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 2JAH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 30Right-handed alpha
Helix 2
2
A
40 54Right-handed alpha
Helix 3
3
A
67 83Right-handed alpha
Helix 4
4
A
104 116Right-handed alpha
Helix 5
5
A
116 134Right-handed alpha
Helix 6
6
A
142 146Right-handed 310
Helix 7
7
A
152 174Right-handed alpha
Helix 8
8
A
175 177Right-handed 310
Helix 9
9
A
191 196Right-handed 310
Helix 10
10
A
198 209Right-handed alpha
Helix 11
11
A
216 230Right-handed alpha
Helix 12
12
B
17 30Right-handed alpha
Helix 13
13
B
40 54Right-handed alpha
Helix 14
14
B
67 83Right-handed alpha
Helix 15
15
B
104 116Right-handed alpha
Helix 16
16
B
116 134Right-handed alpha
Helix 17
17
B
142 146Right-handed 310
Helix 18
18
B
152 174Right-handed alpha
Helix 19
19
B
175 177Right-handed 310
Helix 20
20
B
191 196Right-handed 310
Helix 21
21
B
198 209Right-handed alpha
Helix 22
22
B
216 230Right-handed alpha
Helix 23
23
C
17 30Right-handed alpha
Helix 24
24
C
40 54Right-handed alpha
Helix 25
25
C
67 83Right-handed alpha
Helix 26
26
C
104 116Right-handed alpha
Helix 27
27
C
116 134Right-handed alpha
Helix 28
28
C
142 146Right-handed 310
Helix 29
29
C
152 174Right-handed alpha
Helix 30
30
C
175 177Right-handed 310
Helix 31
31
C
191 196Right-handed 310
Helix 32
32
C
198 210Right-handed alpha
Helix 33
33
C
216 230Right-handed alpha
Helix 34
34
D
17 30Right-handed alpha
Helix 35
35
D
40 54Right-handed alpha
Helix 36
36
D
67 83Right-handed alpha
Helix 37
37
D
105 116Right-handed alpha
Helix 38
38
D
116 134Right-handed alpha
Helix 39
39
D
142 146Right-handed 310
Helix 40
40
D
152 174Right-handed alpha
Helix 41
41
D
175 177Right-handed 310
Helix 42
42
D
191 196Right-handed 310
Helix 43
43
D
198 209Right-handed alpha
Helix 44
44
D
216 230Right-handed alpha
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There are 2 sheets in PDB entry 2JAH. Click on sheet of interest to get list of strands forming it: AA, CA,

There are 14 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
58 62first strand
Strand 2
A
33 38parallel
Strand 3
A
9 13parallel
Strand 4
A
87 90parallel
Strand 5
A
136 140parallel
Strand 6
A
179 185parallel
Strand 7
A
234 243parallel
Strand 8
B
234 243anti-parallel
Strand 9
B
179 185parallel
Strand 10
B
136 140parallel
Strand 11
B
87 90parallel
Strand 12
B
9 13parallel
Strand 13
B
33 38parallel
Strand 14
B
58 62parallel
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There are 14 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
58 62first strand
Strand 2
C
33 38parallel
Strand 3
C
9 13parallel
Strand 4
C
87 90parallel
Strand 5
C
136 140parallel
Strand 6
C
179 185parallel
Strand 7
C
234 243parallel
Strand 8
D
234 243anti-parallel
Strand 9
D
179 185parallel
Strand 10
D
136 140parallel
Strand 11
D
87 90parallel
Strand 12
D
9 13parallel
Strand 13
D
33 38parallel
Strand 14
D
58 62parallel
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