Analysis of interatomic Contacts of Structural Units in PDB entry:
2JAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JAM entry

There are 4 chains in PDB entry 2JAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 18SER 303
B
 THR 16LYS 302
D
 GLY 14ALA 19
E
 VAL 14PHE 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2JAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 22Right-handed alpha
Helix 2
2
A
64 76Right-handed alpha
Helix 3
3
A
105 114Right-handed alpha
Helix 4
4
A
117 138Right-handed alpha
Helix 5
5
A
146 150Right-handed 310
Helix 6
6
A
177 182Right-handed alpha
Helix 7
7
A
198 216Right-handed alpha
Helix 8
8
A
224 235Right-handed alpha
Helix 9
9
A
248 260Right-handed alpha
Helix 10
10
A
268 274Right-handed alpha
Helix 11
11
A
275 280Right-handed alpha
Helix 12
12
A
288 300Right-handed alpha
Helix 13
13
B
18 22Right-handed alpha
Helix 14
14
B
64 76Right-handed alpha
Helix 15
15
B
105 114Right-handed alpha
Helix 16
16
B
117 138Right-handed alpha
Helix 17
17
B
146 150Right-handed 310
Helix 18
18
B
177 182Right-handed alpha
Helix 19
19
B
198 216Right-handed alpha
Helix 20
20
B
224 235Right-handed alpha
Helix 21
21
B
248 260Right-handed alpha
Helix 22
22
B
268 274Right-handed alpha
Helix 23
23
B
275 280Right-handed alpha
Helix 24
24
B
288 300Right-handed alpha
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There are 4 sheets in PDB entry 2JAM. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 31first strand
Strand 2
A
35 42anti-parallel
Strand 3
A
48 55anti-parallel
Strand 4
A
93 98anti-parallel
Strand 5
A
84 89anti-parallel
Strand 6
D
16 17anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
161 162anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 31first strand
Strand 2
B
35 42anti-parallel
Strand 3
B
48 55anti-parallel
Strand 4
B
93 98anti-parallel
Strand 5
B
84 89anti-parallel
Strand 6
E
15 16anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
161 162anti-parallel
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