Analysis of interatomic Contacts of Structural Units in PDB entry:
2JAO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JAO entry

There is 1 chain in PDB entry 2JAO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 4SER 199
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 11 helices in PDB entry 2JAO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 32Right-handed alpha
Helix 2
2
A
39 43Right-handed 310
Helix 3
3
A
47 56Right-handed alpha
Helix 4
4
A
57 68Right-handed alpha
Helix 5
5
A
81 91Right-handed alpha
Helix 6
6
A
106 109Right-handed 310
Helix 7
7
A
110 122Right-handed alpha
Helix 8
8
A
123 128Right-handed alpha
Helix 9
9
A
135 139Right-handed 310
Helix 10
10
A
167 171Right-handed 310
Helix 11
11
A
188 198Right-handed alpha
Back to top of page

There is 1 sheet ( AA) in PDB entry 2JAO.

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
95 101parallel
Strand 3
A
7 12parallel
Strand 4
A
143 146parallel
Strand 5
A
161 165parallel
Strand 6
A
181 182parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il