Analysis of interatomic Contacts of Structural Units in PDB entry:
2JAX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JAX entry

There is 1 chain in PDB entry 2JAX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 8GLU 294
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 2JAX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
17 34Right-handed alpha
Helix 2
2
A
62 83Right-handed alpha
Helix 3
3
A
99 109Right-handed alpha
Helix 4
4
A
130 140Right-handed alpha
Helix 5
5
A
171 186Right-handed alpha
Helix 6
6
A
208 224Right-handed alpha
Helix 7
7
A
224 229Right-handed alpha
Helix 8
8
A
245 250Right-handed alpha
Helix 9
9
A
251 254Right-handed 310
Helix 10
10
A
275 285Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 2JAX. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
113 117parallel
Strand 3
A
144 147parallel
Strand 4
A
289 291anti-parallel
Strand 5
A
258 260parallel
Strand 6
A
162 165parallel
Strand 7
A
190 195parallel
Strand 8
A
236 241parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 43first strand
Strand 2
A
94 96parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il