Analysis of interatomic Contacts of Structural Units in PDB entry:
2JB6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JB6 entry

There are 4 chains in PDB entry 2JB6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3THR 214
B
 GLN 3LYS 221
H
 GLN 3LYS 221
L
 LEU 4THR 214
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 13 helices in PDB entry 2JB6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
81 85Right-handed 310
Helix 2
2
A
126 132Right-handed alpha
Helix 3
3
A
186 193Right-handed alpha
Helix 4
4
B
74 76Right-handed 310
Helix 5
5
B
87 91Right-handed 310
Helix 6
6
B
163 165Right-handed 310
Helix 7
7
B
208 211Right-handed 310
Helix 8
8
H
163 165Right-handed 310
Helix 9
9
H
208 211Right-handed 310
Helix 10
10
L
28 32Right-handed 310
Helix 11
11
L
81 85Right-handed 310
Helix 12
12
L
126 132Right-handed alpha
Helix 13
13
L
186 192Right-handed alpha
Back to top of page

There are 18 sheets in PDB entry 2JB6. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, HA, HB, HC, HD, LA, LB, LC,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
106 110anti-parallel
Strand 5
A
9 12parallel
Strand 6
L
9 12anti-parallel
Strand 7
L
106 110parallel
Strand 8
L
86 93anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 50first strand
Strand 2
A
35 40anti-parallel
Strand 3
A
86 93anti-parallel
Strand 4
A
100 102anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 23first strand
Strand 2
A
72 77anti-parallel
Strand 3
A
64 69anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
136 144anti-parallel
Strand 3
A
177 184anti-parallel
Strand 4
A
164 166anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
119 123first strand
Strand 2
A
136 144anti-parallel
Strand 3
A
177 184anti-parallel
Strand 4
A
170 171anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
158 159first strand
Strand 2
A
150 155anti-parallel
Strand 3
A
196 201anti-parallel
Strand 4
A
206 211anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 6first strand
Strand 2
B
18 23anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
114 118parallel
Strand 3
B
92 101anti-parallel
Strand 4
B
34 39anti-parallel
Strand 5
B
45 51anti-parallel
Strand 6
B
58 60anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
114 118parallel
Strand 3
B
92 101anti-parallel
Strand 4
B
106 110anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
143 152anti-parallel
Strand 3
B
183 191anti-parallel
Strand 4
B
170 177anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 161first strand
Strand 2
B
201 207anti-parallel
Strand 3
B
212 219anti-parallel
Back to list of sheets
Back to top of page

There are 9 strands in HA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
10 12first strand
Strand 2
H
114 118parallel
Strand 3
H
92 101anti-parallel
Strand 4
H
58 60first strand
Strand 5
H
45 51anti-parallel
Strand 6
H
34 39anti-parallel
Strand 7
H
92 101anti-parallel
Strand 8
H
106 110anti-parallel
Strand 9
H
92 101anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in HB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
18 20first strand
Strand 2
H
78 83anti-parallel
Strand 3
H
68 73anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in HC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
127 131first strand
Strand 2
H
142 152anti-parallel
Strand 3
H
183 192anti-parallel
Strand 4
H
170 172anti-parallel
Strand 5
H
183 192anti-parallel
Strand 6
H
176 177anti-parallel
Strand 7
H
183 192anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in HD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
158 161first strand
Strand 2
H
201 207anti-parallel
Strand 3
H
212 219anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in LA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
18 23first strand
Strand 2
L
72 77anti-parallel
Strand 3
L
64 69anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in LB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
119 123first strand
Strand 2
L
136 144anti-parallel
Strand 3
L
177 184anti-parallel
Strand 4
L
164 166anti-parallel
Strand 5
L
177 184anti-parallel
Strand 6
L
170 171anti-parallel
Strand 7
L
177 184anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in LC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
158 160first strand
Strand 2
L
150 155anti-parallel
Strand 3
L
196 201anti-parallel
Strand 4
L
206 211anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il