Analysis of interatomic Contacts of Structural Units in PDB entry:
2JB7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JB7 entry

There are 3 chains in PDB entry 2JB7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 5LEU 167
B
 SER 5LEU 167
C
 ILE 6LEU 167
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 2JB7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
30 41Right-handed alpha
Helix 2
2
A
67 82Right-handed alpha
Helix 3
3
A
95 105Right-handed alpha
Helix 4
4
A
148 162Right-handed alpha
Helix 5
5
B
30 41Right-handed alpha
Helix 6
6
B
67 82Right-handed alpha
Helix 7
7
B
95 105Right-handed alpha
Helix 8
8
B
148 162Right-handed alpha
Helix 9
9
C
30 41Right-handed alpha
Helix 10
10
C
67 82Right-handed alpha
Helix 11
11
C
95 105Right-handed alpha
Helix 12
12
C
148 162Right-handed alpha
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There are 6 sheets in PDB entry 2JB7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, CA,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 13first strand
Strand 2
A
120 128anti-parallel
Strand 3
A
131 139anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 116first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
86 92anti-parallel
Strand 4
A
47 53anti-parallel
Strand 5
A
60 65anti-parallel
Strand 6
B
145 146parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
C
60 65parallel
Strand 3
C
47 53anti-parallel
Strand 4
C
86 92anti-parallel
Strand 5
C
20 25anti-parallel
Strand 6
C
111 116anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 12first strand
Strand 2
B
120 128anti-parallel
Strand 3
B
131 139anti-parallel
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There are 6 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 116first strand
Strand 2
B
20 25anti-parallel
Strand 3
B
86 92anti-parallel
Strand 4
B
47 53anti-parallel
Strand 5
B
60 65anti-parallel
Strand 6
C
145 146parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
7 13first strand
Strand 2
C
120 128anti-parallel
Strand 3
C
131 139anti-parallel
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