Analysis of interatomic Contacts of Structural Units in PDB entry:
2JBH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JBH entry

There are 4 chains in PDB entry 2JBH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 7PHE 81
A
 ALA 83VAL 225
B
 PRO 9PHE 81
B
 ALA 83VAL 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2JBH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 14Right-handed 310
Helix 2
2
A
25 29Right-handed 310
Helix 3
3
A
32 36Right-handed 310
Helix 4
4
A
45 65Right-handed alpha
Helix 5
5
A
83 96Right-handed alpha
Helix 6
6
A
128 133Right-handed 310
Helix 7
7
A
147 159Right-handed alpha
Helix 8
8
A
216 223Right-handed alpha
Helix 9
9
B
10 14Right-handed 310
Helix 10
10
B
25 29Right-handed 310
Helix 11
11
B
32 36Right-handed 310
Helix 12
12
B
45 65Right-handed alpha
Helix 13
13
B
83 96Right-handed alpha
Helix 14
14
B
128 133Right-handed 310
Helix 15
15
B
147 159Right-handed alpha
Helix 16
16
B
216 223Right-handed alpha
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There are 4 sheets in PDB entry 2JBH. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 7 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 16first strand
Strand 2
A
185 190parallel
Strand 3
A
164 173parallel
Strand 4
A
136 144parallel
Strand 5
A
69 75parallel
Strand 6
A
102 109parallel
Strand 7
A
123 124anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 44first strand
Strand 2
A
212 215anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
15 16first strand
Strand 2
B
185 190parallel
Strand 3
B
164 173parallel
Strand 4
B
136 144parallel
Strand 5
B
67 75parallel
Strand 6
B
100 113parallel
Strand 7
B
119 124anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 44first strand
Strand 2
B
212 215anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il