Analysis of interatomic Contacts of Structural Units in PDB entry:
2JBM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2JBM entry

There are 12 chains in PDB entry 2JBM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 3	VAL 292
B	ASP 4	VAL 292
C	MET 3	PHE 288
D	ASP 4	PHE 288
E	ASP 4	VAL 292
F	ASP 4	PHE 288
G	ASP 4	PHE 288
H	ASP 4	PHE 288
I	ASP 4	VAL 292
J	ASP 4	PHE 288
K	ASP 4	PHE 288
L	ASP 4	PHE 288

There are144 helices in PDB entry 2JBM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	4	12	Right-handed 310
Helix 2	2	A	13	29	Right-handed alpha
Helix 3	3	A	35	40	Right-handed alpha
Helix 4	4	A	58	69	Right-handed alpha
Helix 5	5	A	96	130	Right-handed alpha
Helix 6	6	A	146	157	Right-handed alpha
Helix 7	7	A	173	181	Right-handed alpha
Helix 8	8	A	182	195	Right-handed alpha
Helix 9	9	A	206	216	Right-handed alpha
Helix 10	10	A	227	242	Right-handed alpha
Helix 11	11	A	257	262	Right-handed alpha
Helix 12	12	A	272	277	Right-handed alpha
Helix 13	13	B	4	12	Right-handed 310
Helix 14	14	B	13	29	Right-handed alpha
Helix 15	15	B	35	40	Right-handed alpha
Helix 16	16	B	58	69	Right-handed alpha
Helix 17	17	B	96	130	Right-handed alpha
Helix 18	18	B	146	157	Right-handed alpha
Helix 19	19	B	173	181	Right-handed alpha
Helix 20	20	B	182	195	Right-handed alpha
Helix 21	21	B	206	216	Right-handed alpha
Helix 22	22	B	227	242	Right-handed alpha
Helix 23	23	B	257	262	Right-handed alpha
Helix 24	24	B	272	277	Right-handed alpha
Helix 25	25	C	4	12	Right-handed 310
Helix 26	26	C	13	29	Right-handed alpha
Helix 27	27	C	35	40	Right-handed alpha
Helix 28	28	C	58	69	Right-handed alpha
Helix 29	29	C	96	130	Right-handed alpha
Helix 30	30	C	146	157	Right-handed alpha
Helix 31	31	C	173	181	Right-handed alpha
Helix 32	32	C	182	195	Right-handed alpha
Helix 33	33	C	206	216	Right-handed alpha
Helix 34	34	C	227	242	Right-handed alpha
Helix 35	35	C	257	262	Right-handed alpha
Helix 36	36	C	272	277	Right-handed alpha
Helix 37	37	D	4	12	Right-handed 310
Helix 38	38	D	13	29	Right-handed alpha
Helix 39	39	D	35	40	Right-handed alpha
Helix 40	40	D	58	69	Right-handed alpha
Helix 41	41	D	96	130	Right-handed alpha
Helix 42	42	D	146	157	Right-handed alpha
Helix 43	43	D	173	181	Right-handed alpha
Helix 44	44	D	182	195	Right-handed alpha
Helix 45	45	D	206	216	Right-handed alpha
Helix 46	46	D	227	242	Right-handed alpha
Helix 47	47	D	257	262	Right-handed alpha
Helix 48	48	D	272	277	Right-handed alpha
Helix 49	49	E	4	12	Right-handed 310
Helix 50	50	E	13	29	Right-handed alpha
Helix 51	51	E	35	40	Right-handed alpha
Helix 52	52	E	58	69	Right-handed alpha
Helix 53	53	E	96	130	Right-handed alpha
Helix 54	54	E	146	157	Right-handed alpha
Helix 55	55	E	173	181	Right-handed alpha
Helix 56	56	E	182	195	Right-handed alpha
Helix 57	57	E	206	216	Right-handed alpha
Helix 58	58	E	227	242	Right-handed alpha
Helix 59	59	E	257	262	Right-handed alpha
Helix 60	60	E	272	277	Right-handed alpha
Helix 61	61	F	4	12	Right-handed 310
Helix 62	62	F	13	29	Right-handed alpha
Helix 63	63	F	35	40	Right-handed alpha
Helix 64	64	F	58	69	Right-handed alpha
Helix 65	65	F	96	130	Right-handed alpha
Helix 66	66	F	146	157	Right-handed alpha
Helix 67	67	F	173	181	Right-handed alpha
Helix 68	68	F	182	195	Right-handed alpha
Helix 69	69	F	206	216	Right-handed alpha
Helix 70	70	F	227	242	Right-handed alpha
Helix 71	71	F	257	262	Right-handed alpha
Helix 72	72	F	272	277	Right-handed alpha
Helix 73	73	G	4	12	Right-handed 310
Helix 74	74	G	13	29	Right-handed alpha
Helix 75	75	G	35	40	Right-handed alpha
Helix 76	76	G	58	69	Right-handed alpha
Helix 77	77	G	96	130	Right-handed alpha
Helix 78	78	G	146	157	Right-handed alpha
Helix 79	79	G	173	181	Right-handed alpha
Helix 80	80	G	182	195	Right-handed alpha
Helix 81	81	G	206	216	Right-handed alpha
Helix 82	82	G	227	242	Right-handed alpha
Helix 83	83	G	257	262	Right-handed alpha
Helix 84	84	G	272	277	Right-handed alpha
Helix 85	85	H	4	12	Right-handed 310
Helix 86	86	H	13	29	Right-handed alpha
Helix 87	87	H	35	40	Right-handed alpha
Helix 88	88	H	58	69	Right-handed alpha
Helix 89	89	H	96	130	Right-handed alpha
Helix 90	90	H	146	157	Right-handed alpha
Helix 91	91	H	173	181	Right-handed alpha
Helix 92	92	H	182	195	Right-handed alpha
Helix 93	93	H	206	216	Right-handed alpha
Helix 94	94	H	227	242	Right-handed alpha
Helix 95	95	H	257	262	Right-handed alpha
Helix 96	96	H	272	277	Right-handed alpha
Helix 97	97	I	4	12	Right-handed 310
Helix 98	98	I	13	29	Right-handed alpha
Helix 99	99	I	35	40	Right-handed alpha
Helix 100	100	I	58	69	Right-handed alpha
Helix 101	101	I	96	130	Right-handed alpha
Helix 102	102	I	146	157	Right-handed alpha
Helix 103	103	I	173	181	Right-handed alpha
Helix 104	104	I	182	195	Right-handed alpha
Helix 105	105	I	206	216	Right-handed alpha
Helix 106	106	I	227	242	Right-handed alpha
Helix 107	107	I	257	262	Right-handed alpha
Helix 108	108	I	272	277	Right-handed alpha
Helix 109	109	J	4	12	Right-handed 310
Helix 110	110	J	13	29	Right-handed alpha
Helix 111	111	J	35	40	Right-handed alpha
Helix 112	112	J	58	69	Right-handed alpha
Helix 113	113	J	96	130	Right-handed alpha
Helix 114	114	J	146	157	Right-handed alpha
Helix 115	115	J	173	181	Right-handed alpha
Helix 116	116	J	182	195	Right-handed alpha
Helix 117	117	J	206	216	Right-handed alpha
Helix 118	118	J	227	242	Right-handed alpha
Helix 119	119	J	257	262	Right-handed alpha
Helix 120	120	J	272	277	Right-handed alpha
Helix 121	121	K	4	12	Right-handed 310
Helix 122	122	K	13	29	Right-handed alpha
Helix 123	123	K	35	40	Right-handed alpha
Helix 124	124	K	58	69	Right-handed alpha
Helix 125	125	K	96	130	Right-handed alpha
Helix 126	126	K	146	157	Right-handed alpha
Helix 127	127	K	173	181	Right-handed alpha
Helix 128	128	K	182	195	Right-handed alpha
Helix 129	129	K	206	216	Right-handed alpha
Helix 130	130	K	227	242	Right-handed alpha
Helix 131	131	K	257	262	Right-handed alpha
Helix 132	132	K	272	277	Right-handed alpha
Helix 133	133	L	4	12	Right-handed 310
Helix 134	134	L	13	29	Right-handed alpha
Helix 135	135	L	35	40	Right-handed alpha
Helix 136	136	L	58	69	Right-handed alpha
Helix 137	137	L	96	130	Right-handed alpha
Helix 138	138	L	146	157	Right-handed alpha
Helix 139	139	L	173	181	Right-handed alpha
Helix 140	140	L	182	195	Right-handed alpha
Helix 141	141	L	206	216	Right-handed alpha
Helix 142	142	L	227	242	Right-handed alpha
Helix 143	143	L	257	262	Right-handed alpha
Helix 144	144	L	272	277	Right-handed alpha

There are 36 sheets in PDB entry 2JBM. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C, EA, EB, EC, FA, FB, FC, GA, GB, GC, HA, HB, HC, IA, IB, IC, JA, JB, JC, KA, KB, KC, LA, LB, LC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	87	95	anti-parallel
Strand 3	A	43	50	anti-parallel
Strand 4	A	283	290	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	54	55	first strand
Strand 2	A	82	83	anti-parallel

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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	137	first strand
Strand 2	A	268	270	parallel
Strand 3	A	246	250	parallel
Strand 4	A	220	224	parallel
Strand 5	A	200	204	parallel
Strand 6	A	170	172	parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	87	95	anti-parallel
Strand 3	B	43	50	anti-parallel
Strand 4	B	283	290	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	55	first strand
Strand 2	B	82	83	anti-parallel

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There are 6 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	135	137	first strand
Strand 2	B	268	270	parallel
Strand 3	B	246	250	parallel
Strand 4	B	220	224	parallel
Strand 5	B	200	204	parallel
Strand 6	B	170	172	parallel

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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	87	95	anti-parallel
Strand 3	C	43	50	anti-parallel
Strand 4	C	283	287	anti-parallel

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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	82	83	anti-parallel

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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	137	first strand
Strand 2	C	268	270	parallel
Strand 3	C	246	250	parallel
Strand 4	C	220	224	parallel
Strand 5	C	200	204	parallel
Strand 6	C	170	172	parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	75	first strand
Strand 2	D	87	95	anti-parallel
Strand 3	D	43	50	anti-parallel
Strand 4	D	283	287	anti-parallel

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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	54	55	first strand
Strand 2	D	82	83	anti-parallel

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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	135	137	first strand
Strand 2	D	268	270	parallel
Strand 3	D	246	250	parallel
Strand 4	D	220	224	parallel
Strand 5	D	200	204	parallel
Strand 6	D	170	172	parallel

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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	72	75	first strand
Strand 2	E	87	95	anti-parallel
Strand 3	E	43	50	anti-parallel
Strand 4	E	283	290	anti-parallel

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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	54	55	first strand
Strand 2	E	82	83	anti-parallel

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There are 6 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	137	first strand
Strand 2	E	268	270	parallel
Strand 3	E	246	250	parallel
Strand 4	E	220	224	parallel
Strand 5	E	200	204	parallel
Strand 6	E	170	172	parallel

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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	72	75	first strand
Strand 2	F	87	95	anti-parallel
Strand 3	F	43	50	anti-parallel
Strand 4	F	283	287	anti-parallel

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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	54	55	first strand
Strand 2	F	82	83	anti-parallel

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There are 6 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	137	first strand
Strand 2	F	268	270	parallel
Strand 3	F	246	250	parallel
Strand 4	F	220	224	parallel
Strand 5	F	200	204	parallel
Strand 6	F	170	172	parallel

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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	75	first strand
Strand 2	G	87	95	anti-parallel
Strand 3	G	43	50	anti-parallel
Strand 4	G	283	288	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	55	first strand
Strand 2	G	82	83	anti-parallel

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There are 6 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	137	first strand
Strand 2	G	268	270	parallel
Strand 3	G	246	250	parallel
Strand 4	G	220	224	parallel
Strand 5	G	200	204	parallel
Strand 6	G	170	172	parallel

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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	72	75	first strand
Strand 2	H	87	95	anti-parallel
Strand 3	H	43	50	anti-parallel
Strand 4	H	283	287	anti-parallel

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There are 2 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	54	55	first strand
Strand 2	H	82	83	anti-parallel

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There are 6 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	137	first strand
Strand 2	H	268	270	parallel
Strand 3	H	246	250	parallel
Strand 4	H	220	224	parallel
Strand 5	H	200	204	parallel
Strand 6	H	170	172	parallel

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There are 4 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	72	75	first strand
Strand 2	I	87	95	anti-parallel
Strand 3	I	43	50	anti-parallel
Strand 4	I	283	290	anti-parallel

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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	54	55	first strand
Strand 2	I	82	83	anti-parallel

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There are 6 strands in IC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	135	137	first strand
Strand 2	I	268	270	parallel
Strand 3	I	246	250	parallel
Strand 4	I	220	224	parallel
Strand 5	I	200	204	parallel
Strand 6	I	170	172	parallel

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There are 4 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	72	75	first strand
Strand 2	J	87	95	anti-parallel
Strand 3	J	43	50	anti-parallel
Strand 4	J	283	287	anti-parallel

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There are 2 strands in JB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	54	55	first strand
Strand 2	J	82	83	anti-parallel

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There are 6 strands in JC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	135	137	first strand
Strand 2	J	268	270	parallel
Strand 3	J	246	250	parallel
Strand 4	J	220	224	parallel
Strand 5	J	200	204	parallel
Strand 6	J	170	172	parallel

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There are 4 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	72	75	first strand
Strand 2	K	87	95	anti-parallel
Strand 3	K	43	50	anti-parallel
Strand 4	K	283	287	anti-parallel

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There are 2 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	54	55	first strand
Strand 2	K	82	83	anti-parallel

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There are 6 strands in KC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	135	137	first strand
Strand 2	K	268	270	parallel
Strand 3	K	246	250	parallel
Strand 4	K	220	224	parallel
Strand 5	K	200	204	parallel
Strand 6	K	170	172	parallel

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There are 4 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	72	75	first strand
Strand 2	L	87	95	anti-parallel
Strand 3	L	43	50	anti-parallel
Strand 4	L	283	287	anti-parallel

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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	82	83	anti-parallel

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There are 6 strands in LC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	135	137	first strand
Strand 2	L	268	270	parallel
Strand 3	L	246	250	parallel
Strand 4	L	220	224	parallel
Strand 5	L	200	204	parallel
Strand 6	L	170	172	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2JBM

Analysis of interatomic Contacts of Structural Units in PDB entry:
2JBM