Analysis of interatomic Contacts of Structural Units in PDB entry:
2JBP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2JBP entry

There are 12 chains in PDB entry 2JBP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 46	GLU 350
B	PHE 46	GLU 350
C	PHE 46	GLU 350
D	HIS 47	GLU 350
E	PRO 44	ASP 345
F	GLN 45	GLU 350
G	GLN 45	GLU 350
H	PHE 46	GLU 347
I	GLN 45	GLU 350
J	VAL 48	SER 328
K	HIS 47	ASP 345
L	PRO 44	ASP 345

There are135 helices in PDB entry 2JBP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	98	112	Right-handed alpha
Helix 2	2	A	145	152	Right-handed alpha
Helix 3	3	A	160	180	Right-handed alpha
Helix 4	4	A	188	190	Right-handed 310
Helix 5	5	A	242	259	Right-handed alpha
Helix 6	6	A	272	282	Right-handed alpha
Helix 7	7	A	295	306	Right-handed alpha
Helix 8	8	A	309	313	Right-handed 310
Helix 9	9	A	315	322	Right-handed alpha
Helix 10	10	A	322	327	Right-handed alpha
Helix 11	11	A	328	331	Right-handed 310
Helix 12	12	A	337	344	Right-handed alpha
Helix 13	13	B	98	112	Right-handed alpha
Helix 14	14	B	145	151	Right-handed alpha
Helix 15	15	B	159	180	Right-handed alpha
Helix 16	16	B	188	190	Right-handed 310
Helix 17	17	B	241	259	Right-handed alpha
Helix 18	18	B	272	282	Right-handed alpha
Helix 19	19	B	295	306	Right-handed alpha
Helix 20	20	B	309	313	Right-handed 310
Helix 21	21	B	315	322	Right-handed alpha
Helix 22	22	B	322	327	Right-handed alpha
Helix 23	23	B	328	331	Right-handed 310
Helix 24	24	B	337	343	Right-handed alpha
Helix 25	25	C	58	61	Right-handed 310
Helix 26	26	C	98	112	Right-handed alpha
Helix 27	27	C	146	152	Right-handed alpha
Helix 28	28	C	160	180	Right-handed alpha
Helix 29	29	C	188	190	Right-handed 310
Helix 30	30	C	240	259	Right-handed alpha
Helix 31	31	C	273	282	Right-handed alpha
Helix 32	32	C	295	306	Right-handed alpha
Helix 33	33	C	309	313	Right-handed 310
Helix 34	34	C	315	322	Right-handed alpha
Helix 35	35	C	322	327	Right-handed alpha
Helix 36	36	C	337	344	Right-handed alpha
Helix 37	37	D	98	112	Right-handed alpha
Helix 38	38	D	145	152	Right-handed alpha
Helix 39	39	D	159	180	Right-handed alpha
Helix 40	40	D	188	190	Right-handed 310
Helix 41	41	D	231	235	Right-handed 310
Helix 42	42	D	242	259	Right-handed alpha
Helix 43	43	D	272	282	Right-handed alpha
Helix 44	44	D	295	306	Right-handed alpha
Helix 45	45	D	309	313	Right-handed 310
Helix 46	46	D	315	322	Right-handed alpha
Helix 47	47	D	322	327	Right-handed alpha
Helix 48	48	D	337	344	Right-handed alpha
Helix 49	49	E	99	112	Right-handed alpha
Helix 50	50	E	147	152	Right-handed alpha
Helix 51	51	E	160	180	Right-handed alpha
Helix 52	52	E	240	259	Right-handed alpha
Helix 53	53	E	275	281	Right-handed alpha
Helix 54	54	E	297	302	Right-handed alpha
Helix 55	55	E	315	320	Right-handed alpha
Helix 56	56	E	322	327	Right-handed alpha
Helix 57	57	E	337	342	Right-handed alpha
Helix 58	58	F	58	61	Right-handed 310
Helix 59	59	F	99	111	Right-handed alpha
Helix 60	60	F	146	151	Right-handed alpha
Helix 61	61	F	160	180	Right-handed alpha
Helix 62	62	F	188	190	Right-handed 310
Helix 63	63	F	231	235	Right-handed 310
Helix 64	64	F	240	259	Right-handed alpha
Helix 65	65	F	273	282	Right-handed alpha
Helix 66	66	F	289	294	Right-handed 310
Helix 67	67	F	295	306	Right-handed alpha
Helix 68	68	F	315	322	Right-handed alpha
Helix 69	69	F	322	327	Right-handed alpha
Helix 70	70	F	328	331	Right-handed 310
Helix 71	71	F	337	344	Right-handed alpha
Helix 72	72	G	58	61	Right-handed 310
Helix 73	73	G	98	112	Right-handed alpha
Helix 74	74	G	146	152	Right-handed alpha
Helix 75	75	G	159	179	Right-handed alpha
Helix 76	76	G	188	190	Right-handed 310
Helix 77	77	G	240	259	Right-handed alpha
Helix 78	78	G	272	282	Right-handed alpha
Helix 79	79	G	289	293	Right-handed 310
Helix 80	80	G	295	306	Right-handed alpha
Helix 81	81	G	309	313	Right-handed 310
Helix 82	82	G	315	322	Right-handed alpha
Helix 83	83	G	322	327	Right-handed alpha
Helix 84	84	G	328	331	Right-handed 310
Helix 85	85	G	337	345	Right-handed alpha
Helix 86	86	H	58	61	Right-handed 310
Helix 87	87	H	99	112	Right-handed alpha
Helix 88	88	H	146	152	Right-handed alpha
Helix 89	89	H	160	180	Right-handed alpha
Helix 90	90	H	188	190	Right-handed 310
Helix 91	91	H	240	259	Right-handed alpha
Helix 92	92	H	272	282	Right-handed alpha
Helix 93	93	H	295	306	Right-handed alpha
Helix 94	94	H	315	322	Right-handed alpha
Helix 95	95	H	322	327	Right-handed alpha
Helix 96	96	H	337	344	Right-handed alpha
Helix 97	97	I	58	61	Right-handed 310
Helix 98	98	I	98	112	Right-handed alpha
Helix 99	99	I	145	152	Right-handed alpha
Helix 100	100	I	159	180	Right-handed alpha
Helix 101	101	I	188	190	Right-handed 310
Helix 102	102	I	231	236	Right-handed alpha
Helix 103	103	I	240	259	Right-handed alpha
Helix 104	104	I	272	282	Right-handed alpha
Helix 105	105	I	295	306	Right-handed alpha
Helix 106	106	I	315	322	Right-handed alpha
Helix 107	107	I	322	327	Right-handed alpha
Helix 108	108	I	328	331	Right-handed 310
Helix 109	109	I	337	344	Right-handed alpha
Helix 110	110	J	98	112	Right-handed alpha
Helix 111	111	J	161	168	Right-handed alpha
Helix 112	112	J	171	179	Right-handed alpha
Helix 113	113	J	188	192	Right-handed 310
Helix 114	114	J	243	259	Right-handed alpha
Helix 115	115	J	296	306	Right-handed alpha
Helix 116	116	J	315	320	Right-handed alpha
Helix 117	117	J	322	327	Right-handed alpha
Helix 118	118	K	58	61	Right-handed 310
Helix 119	119	K	98	112	Right-handed alpha
Helix 120	120	K	159	180	Right-handed alpha
Helix 121	121	K	188	190	Right-handed 310
Helix 122	122	K	242	259	Right-handed alpha
Helix 123	123	K	272	282	Right-handed alpha
Helix 124	124	K	295	306	Right-handed alpha
Helix 125	125	K	309	313	Right-handed 310
Helix 126	126	K	315	322	Right-handed alpha
Helix 127	127	K	322	327	Right-handed alpha
Helix 128	128	K	337	342	Right-handed alpha
Helix 129	129	L	98	113	Right-handed alpha
Helix 130	130	L	161	165	Right-handed 310
Helix 131	131	L	166	179	Right-handed alpha
Helix 132	132	L	242	258	Right-handed alpha
Helix 133	133	L	296	305	Right-handed alpha
Helix 134	134	L	322	327	Right-handed alpha
Helix 135	135	L	337	342	Right-handed alpha

There are 41 sheets in PDB entry 2JBP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, CA, CB, CC, CD, A, DB, C, DD, EA, EB, EC, ED, FA, FB, FC, FD, GA, GB, GC, HA, HB, HC, HD, IA, IB, IC, JA, KA, KB, KC, LA, LB, LC, LD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	72	first strand
Strand 2	A	77	83	anti-parallel
Strand 3	A	89	96	anti-parallel
Strand 4	A	131	138	anti-parallel
Strand 5	A	120	128	anti-parallel

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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	159	first strand
Strand 2	A	335	336	anti-parallel

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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	183	first strand
Strand 2	A	212	213	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	194	first strand
Strand 2	A	203	205	anti-parallel

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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	72	first strand
Strand 2	B	77	83	anti-parallel
Strand 3	B	89	96	anti-parallel
Strand 4	B	131	138	anti-parallel
Strand 5	B	120	128	anti-parallel

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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	183	first strand
Strand 2	B	212	213	anti-parallel

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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	192	194	first strand
Strand 2	B	203	205	anti-parallel

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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	71	first strand
Strand 2	C	78	83	anti-parallel
Strand 3	C	89	96	anti-parallel
Strand 4	C	132	138	anti-parallel
Strand 5	C	120	127	anti-parallel
Strand 6	L	49	50	anti-parallel

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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	144	145	first strand
Strand 2	C	192	194	anti-parallel
Strand 3	C	203	205	anti-parallel

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There are 2 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	159	first strand
Strand 2	C	335	336	anti-parallel

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There are 2 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	182	183	first strand
Strand 2	C	212	213	anti-parallel

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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	65	first strand
Strand 2	D	77	83	anti-parallel
Strand 3	D	71	72	anti-parallel

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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	63	65	first strand
Strand 2	D	77	83	anti-parallel
Strand 3	D	89	96	anti-parallel
Strand 4	D	132	138	anti-parallel
Strand 5	D	120	127	anti-parallel

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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	182	183	first strand
Strand 2	D	212	213	anti-parallel

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There are 2 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	192	194	first strand
Strand 2	D	203	205	anti-parallel

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There are 6 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	H	120	128	anti-parallel
Strand 3	H	132	138	anti-parallel
Strand 4	H	89	96	anti-parallel
Strand 5	H	76	83	anti-parallel
Strand 6	H	63	73	anti-parallel

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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	63	71	first strand
Strand 2	E	78	83	anti-parallel
Strand 3	E	89	96	anti-parallel
Strand 4	E	131	138	anti-parallel
Strand 5	E	122	128	anti-parallel

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There are 2 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	159	first strand
Strand 2	E	335	336	anti-parallel

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There are 2 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	182	183	first strand
Strand 2	E	212	213	anti-parallel

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There are 6 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	72	first strand
Strand 2	F	77	83	anti-parallel
Strand 3	F	89	96	anti-parallel
Strand 4	F	131	138	anti-parallel
Strand 5	F	120	128	anti-parallel
Strand 6	G	49	50	anti-parallel

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There are 3 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	144	145	first strand
Strand 2	F	192	194	anti-parallel
Strand 3	F	203	205	anti-parallel

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There are 2 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	159	first strand
Strand 2	F	335	336	anti-parallel

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There are 2 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	182	183	first strand
Strand 2	F	212	213	anti-parallel

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There are 5 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	63	72	first strand
Strand 2	G	77	83	anti-parallel
Strand 3	G	89	96	anti-parallel
Strand 4	G	131	138	anti-parallel
Strand 5	G	120	128	anti-parallel

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There are 2 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	182	183	first strand
Strand 2	G	212	213	anti-parallel

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There are 2 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	192	194	first strand
Strand 2	G	203	205	anti-parallel

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There are 6 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	48	49	first strand
Strand 2	J	120	128	anti-parallel
Strand 3	J	132	139	anti-parallel
Strand 4	J	89	96	anti-parallel
Strand 5	J	79	83	anti-parallel
Strand 6	J	63	69	anti-parallel

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There are 3 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	144	145	first strand
Strand 2	H	192	194	anti-parallel
Strand 3	H	204	205	anti-parallel

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There are 2 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	158	159	first strand
Strand 2	H	335	336	anti-parallel

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There are 2 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	182	183	first strand
Strand 2	H	212	213	anti-parallel

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There are 5 strands in IA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	69	first strand
Strand 2	I	78	83	anti-parallel
Strand 3	I	89	96	anti-parallel
Strand 4	I	131	138	anti-parallel
Strand 5	I	120	128	anti-parallel

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There are 2 strands in IB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	182	183	first strand
Strand 2	I	212	213	anti-parallel

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There are 2 strands in IC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	192	194	first strand
Strand 2	I	203	205	anti-parallel

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There are 2 strands in JA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	182	183	first strand
Strand 2	J	212	213	anti-parallel

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There are 5 strands in KA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	63	65	first strand
Strand 2	K	79	83	anti-parallel
Strand 3	K	90	96	anti-parallel
Strand 4	K	132	139	anti-parallel
Strand 5	K	120	127	anti-parallel

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There are 2 strands in KB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	182	183	first strand
Strand 2	K	212	213	anti-parallel

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There are 2 strands in KC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	192	194	first strand
Strand 2	K	203	205	anti-parallel

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There are 5 strands in LA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	64	66	first strand
Strand 2	L	78	82	anti-parallel
Strand 3	L	89	96	anti-parallel
Strand 4	L	131	138	anti-parallel
Strand 5	L	120	128	anti-parallel

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There are 2 strands in LB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	158	159	first strand
Strand 2	L	335	336	anti-parallel

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There are 2 strands in LC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	182	183	first strand
Strand 2	L	212	213	anti-parallel

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There are 2 strands in LD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	192	194	first strand
Strand 2	L	203	205	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2JBP

Analysis of interatomic Contacts of Structural Units in PDB entry:
2JBP