Analysis of interatomic Contacts of Structural Units in PDB entry:
2JBW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JBW entry

There are 4 chains in PDB entry 2JBW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8HIS 367
B
 GLN 6GLU 366
C
 ASN 15GLU 366
D
 VAL 7GLU 366
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 2JBW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
8 14Right-handed alpha
Helix 2
2
A
15 23Right-handed alpha
Helix 3
3
A
25 34Right-handed alpha
Helix 4
4
A
40 62Right-handed alpha
Helix 5
5
A
64 84Right-handed alpha
Helix 6
6
A
89 106Right-handed alpha
Helix 7
7
A
107 109Right-handed 310
Helix 8
8
A
154 164Right-handed alpha
Helix 9
9
A
176 180Right-handed 310
Helix 10
10
A
188 203Right-handed alpha
Helix 11
11
A
217 230Right-handed alpha
Helix 12
12
A
247 251Right-handed 310
Helix 13
13
A
252 263Right-handed alpha
Helix 14
14
A
267 279Right-handed alpha
Helix 15
15
A
284 288Right-handed 310
Helix 16
16
A
304 314Right-handed alpha
Helix 17
17
A
315 317Right-handed 310
Helix 18
18
A
328 335Right-handed 310
Helix 19
19
A
336 351Right-handed alpha
Helix 20
20
B
8 14Right-handed alpha
Helix 21
21
B
15 22Right-handed alpha
Helix 22
22
B
25 34Right-handed alpha
Helix 23
23
B
40 62Right-handed alpha
Helix 24
24
B
64 84Right-handed alpha
Helix 25
25
B
90 106Right-handed alpha
Helix 26
26
B
107 109Right-handed 310
Helix 27
27
B
150 153Right-handed 310
Helix 28
28
B
154 163Right-handed alpha
Helix 29
29
B
189 203Right-handed alpha
Helix 30
30
B
217 229Right-handed alpha
Helix 31
31
B
247 251Right-handed 310
Helix 32
32
B
252 264Right-handed alpha
Helix 33
33
B
267 279Right-handed alpha
Helix 34
34
B
284 288Right-handed 310
Helix 35
35
B
304 314Right-handed alpha
Helix 36
36
B
328 335Right-handed 310
Helix 37
37
B
336 351Right-handed alpha
Helix 38
38
C
15 23Right-handed alpha
Helix 39
39
C
25 34Right-handed alpha
Helix 40
40
C
40 62Right-handed alpha
Helix 41
41
C
64 83Right-handed alpha
Helix 42
42
C
88 106Right-handed alpha
Helix 43
43
C
107 109Right-handed 310
Helix 44
44
C
150 153Right-handed 310
Helix 45
45
C
154 164Right-handed alpha
Helix 46
46
C
176 183Right-handed 310
Helix 47
47
C
188 203Right-handed alpha
Helix 48
48
C
217 230Right-handed alpha
Helix 49
49
C
247 251Right-handed 310
Helix 50
50
C
252 264Right-handed alpha
Helix 51
51
C
267 279Right-handed alpha
Helix 52
52
C
284 288Right-handed 310
Helix 53
53
C
304 314Right-handed alpha
Helix 54
54
C
328 335Right-handed 310
Helix 55
55
C
336 351Right-handed alpha
Helix 56
56
D
8 12Right-handed 310
Helix 57
57
D
15 23Right-handed alpha
Helix 58
58
D
25 34Right-handed alpha
Helix 59
59
D
40 62Right-handed alpha
Helix 60
60
D
64 83Right-handed alpha
Helix 61
61
D
88 106Right-handed alpha
Helix 62
62
D
107 109Right-handed 310
Helix 63
63
D
150 153Right-handed 310
Helix 64
64
D
154 164Right-handed alpha
Helix 65
65
D
176 180Right-handed 310
Helix 66
66
D
188 201Right-handed alpha
Helix 67
67
D
217 230Right-handed alpha
Helix 68
68
D
247 251Right-handed 310
Helix 69
69
D
252 264Right-handed alpha
Helix 70
70
D
267 279Right-handed alpha
Helix 71
71
D
284 288Right-handed 310
Helix 72
72
D
304 314Right-handed alpha
Helix 73
73
D
328 335Right-handed 310
Helix 74
74
D
336 351Right-handed alpha
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There are 4 sheets in PDB entry 2JBW. Click on sheet of interest to get list of strands forming it: AA, BA, CA, A,

There are 9 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 120first strand
Strand 2
A
123 130anti-parallel
Strand 3
A
167 171anti-parallel
Strand 4
A
138 144parallel
Strand 5
A
206 216parallel
Strand 6
A
235 239parallel
Strand 7
A
292 297parallel
Strand 8
A
319 324parallel
Strand 9
A
360 361parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
113 120first strand
Strand 2
B
123 130anti-parallel
Strand 3
B
167 171anti-parallel
Strand 4
B
138 144parallel
Strand 5
B
206 216parallel
Strand 6
B
236 239parallel
Strand 7
B
292 297parallel
Strand 8
B
319 324parallel
Strand 9
B
359 361parallel
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There are 9 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
113 120first strand
Strand 2
C
123 130anti-parallel
Strand 3
C
167 171anti-parallel
Strand 4
C
138 144parallel
Strand 5
C
206 216parallel
Strand 6
C
236 239parallel
Strand 7
C
292 297parallel
Strand 8
C
319 324parallel
Strand 9
C
359 361parallel
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There are 9 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
113 120first strand
Strand 2
D
123 130anti-parallel
Strand 3
D
167 171anti-parallel
Strand 4
D
138 144parallel
Strand 5
D
206 216parallel
Strand 6
D
236 239parallel
Strand 7
D
292 297parallel
Strand 8
D
319 324parallel
Strand 9
D
359 361parallel
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