Analysis of interatomic Contacts of Structural Units in PDB entry:
2JC4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JC4 entry

There is 1 chain in PDB entry 2JC4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TRP 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2JC4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
38 42Right-handed 310
Helix 3
3
A
43 49Right-handed alpha
Helix 4
4
A
114 136Right-handed alpha
Helix 5
5
A
152 155Right-handed 310
Helix 6
6
A
158 163Right-handed 310
Helix 7
7
A
169 181Right-handed alpha
Helix 8
8
A
187 192Right-handed alpha
Helix 9
9
A
206 211Right-handed alpha
Helix 10
10
A
222 227Right-handed alpha
Helix 11
11
A
235 240Right-handed alpha
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There are 2 sheets in PDB entry 2JC4. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 57first strand
Strand 2
A
65 69anti-parallel
Strand 3
A
29 33anti-parallel
Strand 4
A
2 7parallel
Strand 5
A
250 254anti-parallel
Strand 6
A
229 234anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
74 78first strand
Strand 2
A
91 96anti-parallel
Strand 3
A
99 105anti-parallel
Strand 4
A
141 146parallel
Strand 5
A
217 221anti-parallel
Strand 6
A
185 186anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il