Analysis of interatomic Contacts of Structural Units in PDB entry:
2JC6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JC6 entry

There are 2 chains in PDB entry 2JC6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 11THR 313
C
 SER 11THR 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 2JC6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
18 22Right-handed alpha
Helix 2
2
A
65 76Right-handed alpha
Helix 3
3
A
105 113Right-handed alpha
Helix 4
4
A
117 138Right-handed alpha
Helix 5
5
A
146 148Right-handed 310
Helix 6
6
A
189 194Right-handed alpha
Helix 7
7
A
200 217Right-handed alpha
Helix 8
8
A
225 236Right-handed alpha
Helix 9
9
A
249 260Right-handed alpha
Helix 10
10
A
269 274Right-handed alpha
Helix 11
11
A
276 281Right-handed alpha
Helix 12
12
A
289 301Right-handed alpha
Helix 13
13
A
304 312Right-handed alpha
Helix 14
14
C
18 22Right-handed alpha
Helix 15
15
C
65 76Right-handed alpha
Helix 16
16
C
105 113Right-handed alpha
Helix 17
17
C
117 138Right-handed alpha
Helix 18
18
C
146 148Right-handed 310
Helix 19
19
C
189 194Right-handed alpha
Helix 20
20
C
200 217Right-handed alpha
Helix 21
21
C
225 235Right-handed alpha
Helix 22
22
C
249 260Right-handed alpha
Helix 23
23
C
269 275Right-handed alpha
Helix 24
24
C
276 281Right-handed alpha
Helix 25
25
C
289 301Right-handed alpha
Helix 26
26
C
304 312Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 2JC6. Click on sheet of interest to get list of strands forming it: AA, AB, CA,

There are 12 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 31first strand
Strand 2
A
36 42anti-parallel
Strand 3
A
48 55anti-parallel
Strand 4
A
93 99anti-parallel
Strand 5
A
84 89anti-parallel
Strand 6
C
13 15anti-parallel
Strand 7
A
13 15anti-parallel
Strand 8
C
84 89anti-parallel
Strand 9
C
93 99anti-parallel
Strand 10
C
48 55anti-parallel
Strand 11
C
36 42anti-parallel
Strand 12
C
23 31anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
161 163anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 152first strand
Strand 2
C
161 163anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il