Analysis of interatomic Contacts of Structural Units in PDB entry:
2JCB


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JCB entry

There are 2 chains in PDB entry 2JCB (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS -4ASN 189
B
 HIS -1LYS 188
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 2JCB. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
0 19Right-handed alpha
Helix 2
2
A
20 37Right-handed alpha
Helix 3
3
A
38 44Right-handed alpha
Helix 4
4
A
59 69Right-handed alpha
Helix 5
5
A
92 94Right-handed 310
Helix 6
6
A
108 111Right-handed 310
Helix 7
7
A
115 119Right-handed 310
Helix 8
8
A
141 147Right-handed alpha
Helix 9
9
A
159 162Right-handed 310
Helix 10
10
B
-1 19Right-handed alpha
Helix 11
11
B
20 37Right-handed alpha
Helix 12
12
B
38 44Right-handed alpha
Helix 13
13
B
59 69Right-handed alpha
Helix 14
14
B
92 94Right-handed 310
Helix 15
15
B
108 111Right-handed 310
Helix 16
16
B
115 119Right-handed 310
Helix 17
17
B
141 147Right-handed alpha
Helix 18
18
B
159 162Right-handed 310
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There are 6 sheets in PDB entry 2JCB. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
84 90anti-parallel
Strand 3
A
72 79anti-parallel
Strand 4
A
46 48parallel
Strand 5
A
121 123parallel
Strand 6
A
153 157parallel
Strand 7
A
178 181parallel
Strand 8
A
184 187anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 100first strand
Strand 2
A
103 106anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
128 129first strand
Strand 2
A
135 136anti-parallel
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There are 7 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 90first strand
Strand 2
B
72 77anti-parallel
Strand 3
B
46 48parallel
Strand 4
B
121 123parallel
Strand 5
B
153 157parallel
Strand 6
B
178 180parallel
Strand 7
B
185 187anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 100first strand
Strand 2
B
103 106anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
128 129first strand
Strand 2
B
135 136anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il