Analysis of interatomic Contacts of Structural Units in PDB entry:
2JCH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JCH entry

There is 1 chain in PDB entry 2JCH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 106SER 789
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2JCH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
337 356Right-handed alpha
Helix 2
2
A
373 386Right-handed alpha
Helix 3
3
A
395 410Right-handed alpha
Helix 4
4
A
411 414Right-handed 310
Helix 5
5
A
462 467Right-handed alpha
Helix 6
6
A
467 474Right-handed alpha
Helix 7
7
A
509 516Right-handed alpha
Helix 8
8
A
518 531Right-handed alpha
Helix 9
9
A
534 542Right-handed alpha
Helix 10
10
A
553 557Right-handed 310
Helix 11
11
A
563 576Right-handed alpha
Helix 12
12
A
609 627Right-handed alpha
Helix 13
13
A
631 640Right-handed alpha
Helix 14
14
A
640 645Right-handed alpha
Helix 15
15
A
691 707Right-handed alpha
Helix 16
16
A
775 787Right-handed alpha
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There are 6 sheets in PDB entry 2JCH. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
115 118first strand
Strand 2
A
107 109anti-parallel
Strand 3
A
389 392parallel
Strand 4
A
586 590anti-parallel
Strand 5
A
596 599anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
434 438first strand
Strand 2
A
421 428anti-parallel
Strand 3
A
670 677anti-parallel
Strand 4
A
660 666anti-parallel
Strand 5
A
649 654anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
482 484first strand
Strand 2
A
506 508anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
579 580first strand
Strand 2
A
605 606anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
724 729first strand
Strand 2
A
752 757anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
737 739first strand
Strand 2
A
746 748anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il