Analysis of interatomic Contacts of Structural Units in PDB entry:
2JCJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JCJ entry

There is 1 chain in PDB entry 2JCJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 82ARG 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 2JCJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 88Right-handed 310
Helix 2
2
A
90 94Right-handed 310
Helix 3
3
A
114 124Right-handed alpha
Helix 4
4
A
138 155Right-handed alpha
Helix 5
5
A
194 218Right-handed alpha
Helix 6
6
A
235 239Right-handed 310
Helix 7
7
A
254 258Right-handed 310
Helix 8
8
A
287 308Right-handed alpha
Helix 9
9
A
314 327Right-handed alpha
Helix 10
10
A
335 338Right-handed 310
Helix 11
11
A
340 344Right-handed 310
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There are 2 sheets in PDB entry 2JCJ. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 108first strand
Strand 2
A
331 333parallel
Strand 3
A
242 246parallel
Strand 4
A
279 286anti-parallel
Strand 5
A
220 224anti-parallel
Strand 6
A
129 135parallel
Strand 7
A
161 167parallel
Strand 8
A
182 188parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 230first strand
Strand 2
A
354 356anti-parallel
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