Analysis of interatomic Contacts of Structural Units in PDB entry:
2JCK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JCK entry

There is 1 chain in PDB entry 2JCK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1083GLU 1360
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2JCK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
1084 1089Right-handed alpha
Helix 2
2
A
1090 1094Right-handed 310
Helix 3
3
A
1114 1126Right-handed alpha
Helix 4
4
A
1138 1155Right-handed alpha
Helix 5
5
A
1169 1173Right-handed 310
Helix 6
6
A
1194 1213Right-handed alpha
Helix 7
7
A
1213 1218Right-handed alpha
Helix 8
8
A
1235 1239Right-handed 310
Helix 9
9
A
1254 1258Right-handed 310
Helix 10
10
A
1287 1308Right-handed alpha
Helix 11
11
A
1314 1327Right-handed alpha
Helix 12
12
A
1335 1338Right-handed 310
Helix 13
13
A
1340 1344Right-handed 310
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There are 2 sheets in PDB entry 2JCK. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1107 1108first strand
Strand 2
A
1331 1333parallel
Strand 3
A
1242 1246parallel
Strand 4
A
1279 1286anti-parallel
Strand 5
A
1220 1224anti-parallel
Strand 6
A
1129 1135parallel
Strand 7
A
1161 1167parallel
Strand 8
A
1182 1188parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1228 1230first strand
Strand 2
A
1354 1356anti-parallel
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