Analysis of interatomic Contacts of Structural Units in PDB entry:
2JCL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JCL entry

There are 2 chains in PDB entry 2JCL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
LYS 1082THR 1358
B
LYS 2082THR 2358
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 2JCL. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
1
A
1084 1088Right-handed 310
Helix 2
2
A
1090 1094Right-handed 310
Helix 3
3
A
1114 1126Right-handed alpha
Helix 4
4
A
1137 1143Right-handed alpha
Helix 5
5
A
1143 1155Right-handed alpha
Helix 6
6
A
1197 1213Right-handed alpha
Helix 7
7
A
1213 1218Right-handed alpha
Helix 8
8
A
1235 1239Right-handed 310
Helix 9
9
A
1254 1258Right-handed 310
Helix 10
10
A
1287 1308Right-handed alpha
Helix 11
11
A
1315 1327Right-handed alpha
Helix 12
12
A
1335 1338Right-handed 310
Helix 13
13
A
1340 1344Right-handed 310
Helix 14
14
B
2090 2094Right-handed 310
Helix 15
15
B
2114 2126Right-handed alpha
Helix 16
16
B
2138 2143Right-handed alpha
Helix 17
17
B
2144 2155Right-handed alpha
Helix 18
18
B
2169 2173Right-handed 310
Helix 19
19
B
2190 2196Right-handed 310
Helix 20
20
B
2198 2213Right-handed alpha
Helix 21
21
B
2213 2218Right-handed alpha
Helix 22
22
B
2235 2239Right-handed 310
Helix 23
23
B
2247 2251Right-handed 310
Helix 24
24
B
2254 2258Right-handed 310
Helix 25
25
B
2287 2308Right-handed alpha
Helix 26
26
B
2314 2327Right-handed alpha
Helix 27
27
B
2335 2338Right-handed 310
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There are 4 sheets in PDB entry 2JCL. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 8 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1107 1108first strand
Strand 2
A
1331 1333parallel
Strand 3
A
1242 1246parallel
Strand 4
A
1279 1286anti-parallel
Strand 5
A
1220 1224anti-parallel
Strand 6
A
1129 1135parallel
Strand 7
A
1161 1167parallel
Strand 8
A
1182 1188parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1228 1230first strand
Strand 2
A
1354 1356anti-parallel
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There are 8 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2107 2108first strand
Strand 2
B
2331 2333parallel
Strand 3
B
2242 2245parallel
Strand 4
B
2283 2286anti-parallel
Strand 5
B
2220 2225anti-parallel
Strand 6
B
2129 2135parallel
Strand 7
B
2161 2167parallel
Strand 8
B
2182 2188parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
2229 2230first strand
Strand 2
B
2354 2355anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il