Analysis of interatomic Contacts of Structural Units in PDB entry:
2JD4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JD4 entry

There are 2 chains in PDB entry 2JD4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 2678PRO 3060
B
 LEU 2685PRO 3060
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 3 helices in PDB entry 2JD4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2955 2959Right-handed 310
Helix 2
2
A
3040 3044Right-handed 310
Helix 3
3
B
3040 3044Right-handed 310
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There are 11 sheets in PDB entry 2JD4. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2699 2700first strand
Strand 2
A
2844 2851anti-parallel
Strand 3
A
2721 2730anti-parallel
Strand 4
A
2783 2790anti-parallel
Strand 5
A
2793 2798anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2699 2700first strand
Strand 2
A
2844 2851anti-parallel
Strand 3
A
2854 2855anti-parallel
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There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2768 2772first strand
Strand 2
A
2757 2763anti-parallel
Strand 3
A
2748 2754anti-parallel
Strand 4
A
2735 2741anti-parallel
Strand 5
A
2820 2823anti-parallel
Strand 6
A
2708 2712anti-parallel
Strand 7
A
2863 2865anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2874 2875first strand
Strand 2
A
3055 3056anti-parallel
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There are 7 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2944 2949first strand
Strand 2
A
2933 2939anti-parallel
Strand 3
A
2924 2930anti-parallel
Strand 4
A
2912 2918anti-parallel
Strand 5
A
2999 3003anti-parallel
Strand 6
A
2878 2893anti-parallel
Strand 7
A
3022 3030anti-parallel
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There are 7 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2944 2949first strand
Strand 2
A
2933 2939anti-parallel
Strand 3
A
2924 2930anti-parallel
Strand 4
A
2912 2918anti-parallel
Strand 5
A
2999 3003anti-parallel
Strand 6
A
2878 2893anti-parallel
Strand 7
A
3046 3051anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2699 2700first strand
Strand 2
B
2844 2851anti-parallel
Strand 3
B
2721 2730anti-parallel
Strand 4
B
2783 2790anti-parallel
Strand 5
B
2793 2798anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2699 2700first strand
Strand 2
B
2844 2851anti-parallel
Strand 3
B
2854 2855anti-parallel
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There are 7 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2768 2776first strand
Strand 2
B
2757 2763anti-parallel
Strand 3
B
2748 2754anti-parallel
Strand 4
B
2735 2741anti-parallel
Strand 5
B
2820 2823anti-parallel
Strand 6
B
2708 2712anti-parallel
Strand 7
B
2863 2865anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2874 2875first strand
Strand 2
B
3055 3056anti-parallel
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There are 15 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2944 2949first strand
Strand 2
B
2933 2939anti-parallel
Strand 3
B
2924 2930anti-parallel
Strand 4
B
2912 2918anti-parallel
Strand 5
B
2999 3003anti-parallel
Strand 6
B
2878 2893anti-parallel
Strand 7
B
2981 2986first strand
Strand 8
B
2973 2978anti-parallel
Strand 9
B
2963 2970anti-parallel
Strand 10
B
2898 2906anti-parallel
Strand 11
B
3022 3032anti-parallel
Strand 12
B
3035 3038anti-parallel
Strand 13
B
3022 3032anti-parallel
Strand 14
B
3046 3051first strand
Strand 15
B
2878 2893anti-parallel
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