Analysis of interatomic Contacts of Structural Units in PDB entry:
2JDL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JDL entry

There are 4 chains in PDB entry 2JDL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 247
B
 MET 1ALA 247
C
 ASP 2ASP 11
D
 ASP 3ASP 11
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2JDL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
10 24Right-handed alpha
Helix 2
2
A
42 45Right-handed 310
Helix 3
3
A
85 92Right-handed alpha
Helix 4
4
A
110 119Right-handed alpha
Helix 5
5
A
121 125Right-handed 310
Helix 6
6
A
128 141Right-handed alpha
Helix 7
7
A
146 158Right-handed alpha
Helix 8
8
A
158 164Right-handed alpha
Helix 9
9
A
164 173Right-handed alpha
Helix 10
10
A
182 191Right-handed alpha
Helix 11
11
A
191 203Right-handed alpha
Helix 12
12
A
230 235Right-handed alpha
Helix 13
13
A
242 246Right-handed 310
Helix 14
14
B
10 23Right-handed alpha
Helix 15
15
B
85 92Right-handed alpha
Helix 16
16
B
110 119Right-handed alpha
Helix 17
17
B
121 125Right-handed 310
Helix 18
18
B
128 141Right-handed alpha
Helix 19
19
B
146 158Right-handed alpha
Helix 20
20
B
158 164Right-handed alpha
Helix 21
21
B
164 174Right-handed alpha
Helix 22
22
B
182 204Right-handed alpha
Helix 23
23
B
230 236Right-handed alpha
Helix 24
24
B
242 246Right-handed 310
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There are 6 sheets in PDB entry 2JDL. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 5first strand
Strand 2
A
47 53parallel
Strand 3
A
59 65anti-parallel
Strand 4
A
71 76anti-parallel
Strand 5
A
79 82anti-parallel
Strand 6
A
101 104parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
27 31first strand
Strand 2
A
34 37anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 216first strand
Strand 2
A
222 227anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 5first strand
Strand 2
B
47 53parallel
Strand 3
B
59 65anti-parallel
Strand 4
B
71 76anti-parallel
Strand 5
B
79 82anti-parallel
Strand 6
B
101 104parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 31first strand
Strand 2
B
34 37anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
208 216first strand
Strand 2
B
222 227anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il