Analysis of interatomic Contacts of Structural Units in PDB entry:
2JDQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JDQ entry

There are 4 chains in PDB entry 2JDQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 84GLU 507
B
 THR 84GLU 509
D
 SER 688MET 756
E
 VAL 686ALA 757
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 67 helices in PDB entry 2JDQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
84 93Right-handed alpha
Helix 2
2
A
95 112Right-handed alpha
Helix 3
3
A
117 123Right-handed alpha
Helix 4
4
A
126 136Right-handed alpha
Helix 5
5
A
140 156Right-handed alpha
Helix 6
6
A
158 168Right-handed alpha
Helix 7
7
A
169 178Right-handed alpha
Helix 8
8
A
182 198Right-handed alpha
Helix 9
9
A
200 210Right-handed alpha
Helix 10
10
A
212 220Right-handed alpha
Helix 11
11
A
225 241Right-handed alpha
Helix 12
12
A
248 252Right-handed 310
Helix 13
13
A
252 254Right-handed 310
Helix 14
14
A
255 263Right-handed alpha
Helix 15
15
A
267 282Right-handed alpha
Helix 16
16
A
285 295Right-handed alpha
Helix 17
17
A
297 305Right-handed alpha
Helix 18
18
A
309 324Right-handed alpha
Helix 19
19
A
327 336Right-handed alpha
Helix 20
20
A
338 347Right-handed alpha
Helix 21
21
A
351 366Right-handed alpha
Helix 22
22
A
369 379Right-handed alpha
Helix 23
23
A
380 392Right-handed alpha
Helix 24
24
A
393 411Right-handed alpha
Helix 25
25
A
412 423Right-handed alpha
Helix 26
26
A
424 431Right-handed alpha
Helix 27
27
A
432 434Right-handed 310
Helix 28
28
A
436 461Right-handed alpha
Helix 29
29
A
467 477Right-handed alpha
Helix 30
30
A
477 486Right-handed alpha
Helix 31
31
A
486 505Right-handed alpha
Helix 32
32
B
84 92Right-handed alpha
Helix 33
33
B
95 110Right-handed alpha
Helix 34
34
B
117 123Right-handed alpha
Helix 35
35
B
127 135Right-handed alpha
Helix 36
36
B
140 156Right-handed alpha
Helix 37
37
B
158 168Right-handed alpha
Helix 38
38
B
169 178Right-handed alpha
Helix 39
39
B
182 198Right-handed alpha
Helix 40
40
B
200 210Right-handed alpha
Helix 41
41
B
212 219Right-handed alpha
Helix 42
42
B
225 241Right-handed alpha
Helix 43
43
B
248 253Right-handed alpha
Helix 44
44
B
255 263Right-handed alpha
Helix 45
45
B
267 282Right-handed alpha
Helix 46
46
B
285 295Right-handed alpha
Helix 47
47
B
297 304Right-handed alpha
Helix 48
48
B
305 307Right-handed 310
Helix 49
49
B
309 324Right-handed alpha
Helix 50
50
B
327 336Right-handed alpha
Helix 51
51
B
338 347Right-handed alpha
Helix 52
52
B
351 366Right-handed alpha
Helix 53
53
B
369 379Right-handed alpha
Helix 54
54
B
381 392Right-handed alpha
Helix 55
55
B
393 411Right-handed alpha
Helix 56
56
B
412 422Right-handed alpha
Helix 57
57
B
424 432Right-handed alpha
Helix 58
58
B
436 461Right-handed alpha
Helix 59
59
B
467 477Right-handed alpha
Helix 60
60
B
477 486Right-handed alpha
Helix 61
61
B
486 504Right-handed alpha
Helix 62
62
D
690 692Right-handed 310
Helix 63
63
D
701 705Right-handed 310
Helix 64
64
D
711 716Right-handed 310
Helix 65
65
E
686 692Right-handed alpha
Helix 66
66
E
701 705Right-handed 310
Helix 67
67
E
712 716Right-handed 310
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There are 2 sheets in PDB entry 2JDQ. Click on sheet of interest to get list of strands forming it: A, EA,

There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
694 699first strand
Strand 2
D
730 736anti-parallel
Strand 3
D
721 727anti-parallel
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There are 3 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
694 699first strand
Strand 2
E
730 736anti-parallel
Strand 3
E
722 727anti-parallel
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