Analysis of interatomic Contacts of Structural Units in PDB entry:
2JDR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JDR entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 3 chains in PDB entry 2JDR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 146LYS 308
A
 PHE 310TRP 479
C
 GLY 3GLU 12
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 2JDR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
148 150Right-handed 310
Helix 2
2
A
185 191Right-handed alpha
Helix 3
3
A
193 207Right-handed alpha
Helix 4
4
A
236 245Right-handed alpha
Helix 5
5
A
248 269Right-handed alpha
Helix 6
6
A
277 279Right-handed 310
Helix 7
7
A
313 317Right-handed 310
Helix 8
8
A
319 323Right-handed 310
Helix 9
9
A
330 346Right-handed alpha
Helix 10
10
A
354 365Right-handed alpha
Helix 11
11
A
374 385Right-handed alpha
Helix 12
12
A
399 405Right-handed alpha
Helix 13
13
A
406 410Right-handed 310
Helix 14
14
A
413 419Right-handed alpha
Helix 15
15
A
440 445Right-handed alpha
Helix 16
16
A
467 471Right-handed 310
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There are 3 sheets in PDB entry 2JDR. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
152 160first strand
Strand 2
A
165 171anti-parallel
Strand 3
A
177 184anti-parallel
Strand 4
A
224 230anti-parallel
Strand 5
A
215 220anti-parallel
Strand 6
A
475 476anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
281 283first strand
Strand 2
A
289 291anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
310 312first strand
Strand 2
C
10 12anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il