Analysis of interatomic Contacts of Structural Units in PDB entry:
2JDY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JDY entry

There are 4 chains in PDB entry 2JDY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 1GLY 114
B
 ALA 1GLY 114
C
 ALA 1GLY 114
D
 ALA 1GLY 114
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 2JDY

There are 6 sheets in PDB entry 2JDY. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB, BC, BD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
62 69anti-parallel
Strand 3
A
13 32anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 7first strand
Strand 2
A
62 69anti-parallel
Strand 3
A
72 73anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
62 69anti-parallel
Strand 3
B
26 32anti-parallel
Strand 4
B
35 42anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 7first strand
Strand 2
B
62 69anti-parallel
Strand 3
B
72 73anti-parallel
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There are 10 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 56first strand
Strand 2
B
13 20anti-parallel
Strand 3
B
105 111anti-parallel
Strand 4
B
87 95anti-parallel
Strand 5
B
75 83anti-parallel
Strand 6
C
75 83anti-parallel
Strand 7
C
87 95anti-parallel
Strand 8
C
105 111anti-parallel
Strand 9
C
13 32anti-parallel
Strand 10
C
35 56anti-parallel
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There are 10 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 56first strand
Strand 2
B
13 20anti-parallel
Strand 3
B
105 111anti-parallel
Strand 4
B
87 95anti-parallel
Strand 5
B
75 83anti-parallel
Strand 6
C
75 83anti-parallel
Strand 7
C
87 95anti-parallel
Strand 8
C
105 111anti-parallel
Strand 9
C
13 32anti-parallel
Strand 10
C
62 69anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il