Analysis of interatomic Contacts of Structural Units in PDB entry:
2JDZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JDZ entry

There is 1 chain in PDB entry 2JDZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 3ASN 239
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 3 helices in PDB entry 2JDZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 20Right-handed 310
Helix 2
2
A
82 86Right-handed 310
Helix 3
3
A
228 232Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 2JDZ. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
6 12anti-parallel
Strand 4
A
211 218anti-parallel
Strand 5
A
90 98anti-parallel
Strand 6
A
181 182anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
26 31anti-parallel
Strand 3
A
6 12anti-parallel
Strand 4
A
211 218anti-parallel
Strand 5
A
90 98anti-parallel
Strand 6
A
172 177anti-parallel
Strand 7
A
142 146anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 80first strand
Strand 2
A
62 69anti-parallel
Strand 3
A
49 57anti-parallel
Strand 4
A
190 200anti-parallel
Strand 5
A
107 118anti-parallel
Strand 6
A
156 157anti-parallel
Strand 7
A
149 150anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
75 80first strand
Strand 2
A
62 69anti-parallel
Strand 3
A
49 57anti-parallel
Strand 4
A
190 200anti-parallel
Strand 5
A
107 118anti-parallel
Strand 6
A
126 132anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il