Analysis of interatomic Contacts of Structural Units in PDB entry:
2JED


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JED entry


Note, this PDB entry contains modified residue(s) PHOSPHOSERINE (SEP) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 6 chains in PDB entry 2JED (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 375LEU 675
A
 PHE 677PHE 694
A
 PHE 696GLY 700
B
 LEU 375LEU 675
B
 PHE 677PHE 694
B
 PHE 696HIS 711
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 2JED. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
376 378Right-handed 310
Helix 2
2
A
413 419Right-handed alpha
Helix 3
3
A
421 433Right-handed alpha
Helix 4
4
A
434 438Right-handed 310
Helix 5
5
A
465 474Right-handed alpha
Helix 6
6
A
477 498Right-handed alpha
Helix 7
7
A
506 508Right-handed 310
Helix 8
8
A
542 546Right-handed 310
Helix 9
9
A
547 552Right-handed alpha
Helix 10
10
A
558 575Right-handed alpha
Helix 11
11
A
583 594Right-handed alpha
Helix 12
12
A
603 614Right-handed alpha
Helix 13
13
A
617 621Right-handed 310
Helix 14
14
A
627 631Right-handed 310
Helix 15
15
A
631 635Right-handed 310
Helix 16
16
A
638 644Right-handed alpha
Helix 17
17
A
679 686Right-handed alpha
Helix 18
18
A
687 692Right-handed 310
Helix 19
19
B
413 419Right-handed alpha
Helix 20
20
B
421 433Right-handed alpha
Helix 21
21
B
434 438Right-handed 310
Helix 22
22
B
465 474Right-handed alpha
Helix 23
23
B
477 498Right-handed alpha
Helix 24
24
B
506 508Right-handed 310
Helix 25
25
B
542 546Right-handed 310
Helix 26
26
B
547 552Right-handed alpha
Helix 27
27
B
558 575Right-handed alpha
Helix 28
28
B
583 594Right-handed alpha
Helix 29
29
B
603 614Right-handed alpha
Helix 30
30
B
617 621Right-handed 310
Helix 31
31
B
627 631Right-handed 310
Helix 32
32
B
631 635Right-handed 310
Helix 33
33
B
638 644Right-handed alpha
Helix 34
34
B
687 692Right-handed 310
Helix 35
35
B
698 708Right-handed alpha
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There are 4 sheets in PDB entry 2JED. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 389first strand
Strand 2
A
392 399anti-parallel
Strand 3
A
405 412anti-parallel
Strand 4
A
453 458anti-parallel
Strand 5
A
444 449anti-parallel
Strand 6
A
696 697anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
510 512first strand
Strand 2
A
518 520anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
380 389first strand
Strand 2
B
392 399anti-parallel
Strand 3
B
405 412anti-parallel
Strand 4
B
453 459anti-parallel
Strand 5
B
444 449anti-parallel
Strand 6
B
696 697anti-parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
510 512first strand
Strand 2
B
518 520anti-parallel
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