Analysis of interatomic Contacts of Structural Units in PDB entry:
2JEM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JEM entry

There are 2 chains in PDB entry 2JEM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 30ARG 261
B
 ALA 30ARG 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2JEM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
113 115Right-handed 310
Helix 2
2
A
215 224Right-handed alpha
Helix 3
3
B
113 115Right-handed 310
Helix 4
4
B
215 225Right-handed alpha
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There are 4 sheets in PDB entry 2JEM. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
62 69anti-parallel
Strand 3
A
72 79anti-parallel
Strand 4
A
244 261anti-parallel
Strand 5
A
117 128anti-parallel
Strand 6
A
210 214anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
62 69anti-parallel
Strand 3
A
72 79anti-parallel
Strand 4
A
244 261anti-parallel
Strand 5
A
131 141anti-parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
62 69anti-parallel
Strand 3
B
72 79anti-parallel
Strand 4
B
244 261anti-parallel
Strand 5
B
117 128anti-parallel
Strand 6
B
210 214anti-parallel
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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
31 32first strand
Strand 2
B
62 69anti-parallel
Strand 3
B
72 79anti-parallel
Strand 4
B
244 261anti-parallel
Strand 5
B
131 141anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il