Analysis of interatomic Contacts of Structural Units in PDB entry:
2JEP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JEP entry

There are 2 chains in PDB entry 2JEP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 33GLN 395
B
 ASP 34GLN 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 2JEP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
34 43Right-handed alpha
Helix 2
2
A
71 81Right-handed alpha
Helix 3
3
A
92 95Right-handed 310
Helix 4
4
A
105 121Right-handed alpha
Helix 5
5
A
131 135Right-handed 310
Helix 6
6
A
149 168Right-handed alpha
Helix 7
7
A
192 212Right-handed alpha
Helix 8
8
A
214 219Right-handed 310
Helix 9
9
A
227 229Right-handed 310
Helix 10
10
A
230 236Right-handed alpha
Helix 11
11
A
268 273Right-handed alpha
Helix 12
12
A
288 291Right-handed 310
Helix 13
13
A
297 312Right-handed alpha
Helix 14
14
A
313 316Right-handed 310
Helix 15
15
A
335 354Right-handed alpha
Helix 16
16
A
383 394Right-handed alpha
Helix 17
17
B
34 43Right-handed alpha
Helix 18
18
B
71 81Right-handed alpha
Helix 19
19
B
92 95Right-handed 310
Helix 20
20
B
105 121Right-handed alpha
Helix 21
21
B
131 135Right-handed 310
Helix 22
22
B
149 168Right-handed alpha
Helix 23
23
B
192 213Right-handed alpha
Helix 24
24
B
214 219Right-handed 310
Helix 25
25
B
227 229Right-handed 310
Helix 26
26
B
230 236Right-handed alpha
Helix 27
27
B
268 273Right-handed alpha
Helix 28
28
B
288 291Right-handed 310
Helix 29
29
B
297 312Right-handed alpha
Helix 30
30
B
313 316Right-handed 310
Helix 31
31
B
335 354Right-handed alpha
Helix 32
32
B
383 394Right-handed alpha
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There are 6 sheets in PDB entry 2JEP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 48first strand
Strand 2
A
85 88parallel
Strand 3
A
125 128parallel
Strand 4
A
175 178parallel
Strand 5
A
222 225parallel
Strand 6
A
259 265parallel
Strand 7
A
319 324parallel
Strand 8
A
357 362parallel
Strand 9
A
45 48parallel
Strand 10
A
45 48first strand
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
59 60anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
380 381anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
45 48first strand
Strand 2
B
85 88parallel
Strand 3
B
125 128parallel
Strand 4
B
175 178parallel
Strand 5
B
222 225parallel
Strand 6
B
259 265parallel
Strand 7
B
319 324parallel
Strand 8
B
357 362parallel
Strand 9
B
45 48parallel
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There are 2 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
55 56first strand
Strand 2
B
59 60anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
374 375first strand
Strand 2
B
380 381anti-parallel
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