Analysis of interatomic Contacts of Structural Units in PDB entry:
2JEQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JEQ entry

There is 1 chain in PDB entry 2JEQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 37GLN 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 2JEQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 43Right-handed alpha
Helix 2
2
A
71 81Right-handed alpha
Helix 3
3
A
92 95Right-handed 310
Helix 4
4
A
105 121Right-handed alpha
Helix 5
5
A
131 135Right-handed 310
Helix 6
6
A
149 168Right-handed alpha
Helix 7
7
A
192 212Right-handed alpha
Helix 8
8
A
230 236Right-handed alpha
Helix 9
9
A
268 273Right-handed alpha
Helix 10
10
A
297 312Right-handed alpha
Helix 11
11
A
313 316Right-handed 310
Helix 12
12
A
335 354Right-handed alpha
Helix 13
13
A
383 394Right-handed alpha
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There are 3 sheets in PDB entry 2JEQ. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
85 88parallel
Strand 3
A
125 129parallel
Strand 4
A
175 178parallel
Strand 5
A
222 225parallel
Strand 6
A
259 265parallel
Strand 7
A
319 324parallel
Strand 8
A
356 360parallel
Strand 9
A
45 47parallel
Strand 10
A
45 47first strand
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 56first strand
Strand 2
A
59 60anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 375first strand
Strand 2
A
380 381anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il