Analysis of interatomic Contacts of Structural Units in PDB entry:
2JER

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 2JER entry

There are 7 chains in PDB entry 2JER (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	HIS 356
A	ILE 358	GLY 367
B	ALA 2	HIS 356
B	ILE 358	ARG 365
C	ALA 2	HIS 356
C	ILE 358	GLY 368
D	ALA 2	HIS 162

There are 96 helices in PDB entry 2JER. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	A	9	14	Right-handed alpha
Helix 2	2	A	42	57	Right-handed alpha
Helix 3	3	A	70	78	Right-handed alpha
Helix 4	4	A	93	98	Right-handed alpha
Helix 5	5	A	131	144	Right-handed alpha
Helix 6	6	A	157	160	Right-handed 310
Helix 7	7	A	175	177	Right-handed 310
Helix 8	8	A	186	199	Right-handed alpha
Helix 9	9	A	218	222	Right-handed alpha
Helix 10	10	A	243	255	Right-handed alpha
Helix 11	11	A	323	335	Right-handed alpha
Helix 12	12	A	345	350	Right-handed alpha
Helix 13	13	B	9	14	Right-handed alpha
Helix 14	14	B	42	57	Right-handed alpha
Helix 15	15	B	70	78	Right-handed alpha
Helix 16	16	B	93	98	Right-handed alpha
Helix 17	17	B	131	144	Right-handed alpha
Helix 18	18	B	157	160	Right-handed 310
Helix 19	19	B	175	177	Right-handed 310
Helix 20	20	B	186	199	Right-handed alpha
Helix 21	21	B	218	222	Right-handed alpha
Helix 22	22	B	243	255	Right-handed alpha
Helix 23	23	B	323	335	Right-handed alpha
Helix 24	24	B	345	350	Right-handed alpha
Helix 25	25	C	9	14	Right-handed alpha
Helix 26	26	C	42	57	Right-handed alpha
Helix 27	27	C	70	78	Right-handed alpha
Helix 28	28	C	93	98	Right-handed alpha
Helix 29	29	C	131	144	Right-handed alpha
Helix 30	30	C	157	160	Right-handed 310
Helix 31	31	C	175	177	Right-handed 310
Helix 32	32	C	186	199	Right-handed alpha
Helix 33	33	C	218	222	Right-handed alpha
Helix 34	34	C	243	255	Right-handed alpha
Helix 35	35	C	323	335	Right-handed alpha
Helix 36	36	C	345	350	Right-handed alpha
Helix 37	37	D	9	14	Right-handed alpha
Helix 38	38	D	42	57	Right-handed alpha
Helix 39	39	D	70	78	Right-handed alpha
Helix 40	40	D	93	98	Right-handed alpha
Helix 41	41	D	131	144	Right-handed alpha
Helix 42	42	D	157	160	Right-handed 310
Helix 43	43	D	175	177	Right-handed 310
Helix 44	44	D	186	199	Right-handed alpha
Helix 45	45	D	218	222	Right-handed alpha
Helix 46	46	D	243	255	Right-handed alpha
Helix 47	47	D	323	335	Right-handed alpha
Helix 48	48	D	345	350	Right-handed alpha
Helix 49	49	E	9	14	Right-handed alpha
Helix 50	50	E	42	57	Right-handed alpha
Helix 51	51	E	70	78	Right-handed alpha
Helix 52	52	E	93	98	Right-handed alpha
Helix 53	53	E	131	144	Right-handed alpha
Helix 54	54	E	157	160	Right-handed 310
Helix 55	55	E	175	177	Right-handed 310
Helix 56	56	E	186	199	Right-handed alpha
Helix 57	57	E	218	222	Right-handed alpha
Helix 58	58	E	243	255	Right-handed alpha
Helix 59	59	E	323	335	Right-handed alpha
Helix 60	60	E	345	350	Right-handed alpha
Helix 61	61	F	9	14	Right-handed alpha
Helix 62	62	F	42	57	Right-handed alpha
Helix 63	63	F	70	78	Right-handed alpha
Helix 64	64	F	93	98	Right-handed alpha
Helix 65	65	F	131	144	Right-handed alpha
Helix 66	66	F	157	160	Right-handed 310
Helix 67	67	F	175	177	Right-handed 310
Helix 68	68	F	186	199	Right-handed alpha
Helix 69	69	F	218	222	Right-handed alpha
Helix 70	70	F	243	255	Right-handed alpha
Helix 71	71	F	323	335	Right-handed alpha
Helix 72	72	F	345	350	Right-handed alpha
Helix 73	73	G	9	14	Right-handed alpha
Helix 74	74	G	42	57	Right-handed alpha
Helix 75	75	G	70	78	Right-handed alpha
Helix 76	76	G	93	98	Right-handed alpha
Helix 77	77	G	131	144	Right-handed alpha
Helix 78	78	G	157	160	Right-handed 310
Helix 79	79	G	175	177	Right-handed 310
Helix 80	80	G	186	199	Right-handed alpha
Helix 81	81	G	218	222	Right-handed alpha
Helix 82	82	G	243	255	Right-handed alpha
Helix 83	83	G	323	335	Right-handed alpha
Helix 84	84	G	345	350	Right-handed alpha
Helix 85	85	H	9	14	Right-handed alpha
Helix 86	86	H	42	57	Right-handed alpha
Helix 87	87	H	70	78	Right-handed alpha
Helix 88	88	H	93	98	Right-handed alpha
Helix 89	89	H	131	144	Right-handed alpha
Helix 90	90	H	157	160	Right-handed 310
Helix 91	91	H	175	177	Right-handed 310
Helix 92	92	H	186	199	Right-handed alpha
Helix 93	93	H	218	222	Right-handed alpha
Helix 94	94	H	243	255	Right-handed alpha
Helix 95	95	H	323	335	Right-handed alpha
Helix 96	96	H	345	350	Right-handed alpha

There are 48 sheets in PDB entry 2JER. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, BA, BB, BC, BD, BE, BF, CA, CB, CC, CD, CE, CF, A, DB, C, DD, DE, DF, EA, EB, EC, ED, EE, EF, FA, FB, FC, FD, FE, FF, GA, GB, GC, GD, GE, GF, HA, HB, HC, HD, HE, HF,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	83	86	first strand
Strand 2	A	61	66	parallel
Strand 3	A	23	30	parallel
Strand 4	A	360	363	anti-parallel

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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	16	first strand
Strand 2	A	100	104	anti-parallel
Strand 3	A	108	113	anti-parallel
Strand 4	A	147	151	parallel
Strand 5	A	3	5	parallel

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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	163	first strand
Strand 2	A	167	174	anti-parallel
Strand 3	A	202	207	parallel

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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	222	227	first strand
Strand 2	A	229	234	anti-parallel
Strand 3	A	266	270	parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	277	279	first strand
Strand 2	A	297	300	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	310	first strand
Strand 2	A	312	318	anti-parallel
Strand 3	A	339	344	parallel

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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	83	86	first strand
Strand 2	B	61	66	parallel
Strand 3	B	23	30	parallel
Strand 4	B	360	363	anti-parallel

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There are 5 strands in BB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	16	first strand
Strand 2	B	100	104	anti-parallel
Strand 3	B	108	113	anti-parallel
Strand 4	B	147	151	parallel
Strand 5	B	3	5	parallel

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There are 3 strands in BC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	167	174	anti-parallel
Strand 3	B	202	207	parallel

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There are 3 strands in BD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	222	227	first strand
Strand 2	B	229	234	anti-parallel
Strand 3	B	266	270	parallel

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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	277	279	first strand
Strand 2	B	297	300	anti-parallel

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There are 3 strands in BF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	310	first strand
Strand 2	B	312	318	anti-parallel
Strand 3	B	339	344	parallel

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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	86	first strand
Strand 2	C	61	66	parallel
Strand 3	C	23	30	parallel
Strand 4	C	360	363	anti-parallel

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There are 5 strands in CB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	16	first strand
Strand 2	C	100	104	anti-parallel
Strand 3	C	108	113	anti-parallel
Strand 4	C	147	151	parallel
Strand 5	C	3	5	parallel

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There are 3 strands in CC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	163	first strand
Strand 2	C	167	174	anti-parallel
Strand 3	C	202	207	parallel

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There are 3 strands in CD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	227	first strand
Strand 2	C	229	234	anti-parallel
Strand 3	C	266	270	parallel

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There are 2 strands in CE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	277	279	first strand
Strand 2	C	297	300	anti-parallel

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There are 3 strands in CF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	310	first strand
Strand 2	C	312	318	anti-parallel
Strand 3	C	339	344	parallel

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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	83	86	first strand
Strand 2	D	61	66	parallel
Strand 3	D	23	30	parallel
Strand 4	D	360	363	anti-parallel

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There are 5 strands in DB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	15	16	first strand
Strand 2	D	100	104	anti-parallel
Strand 3	D	108	113	anti-parallel
Strand 4	D	147	151	parallel
Strand 5	D	3	5	parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	163	first strand
Strand 2	D	167	174	anti-parallel
Strand 3	D	202	207	parallel

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There are 3 strands in DD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	222	227	first strand
Strand 2	D	229	234	anti-parallel
Strand 3	D	266	270	parallel

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There are 2 strands in DE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	277	279	first strand
Strand 2	D	297	300	anti-parallel

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There are 3 strands in DF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	308	310	first strand
Strand 2	D	312	318	anti-parallel
Strand 3	D	339	344	parallel

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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	86	first strand
Strand 2	E	61	66	parallel
Strand 3	E	23	30	parallel
Strand 4	E	360	363	anti-parallel

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There are 5 strands in EB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	15	16	first strand
Strand 2	E	100	104	anti-parallel
Strand 3	E	108	113	anti-parallel
Strand 4	E	147	151	parallel
Strand 5	E	3	5	parallel

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There are 3 strands in EC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	161	163	first strand
Strand 2	E	167	174	anti-parallel
Strand 3	E	202	207	parallel

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There are 3 strands in ED sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	222	227	first strand
Strand 2	E	229	234	anti-parallel
Strand 3	E	266	270	parallel

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There are 2 strands in EE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	277	279	first strand
Strand 2	E	297	300	anti-parallel

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There are 3 strands in EF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	308	310	first strand
Strand 2	E	312	318	anti-parallel
Strand 3	E	339	344	parallel

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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	86	first strand
Strand 2	F	61	66	parallel
Strand 3	F	23	30	parallel
Strand 4	F	360	363	anti-parallel

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There are 5 strands in FB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	15	16	first strand
Strand 2	F	100	104	anti-parallel
Strand 3	F	108	113	anti-parallel
Strand 4	F	147	151	parallel
Strand 5	F	3	5	parallel

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There are 3 strands in FC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	163	first strand
Strand 2	F	167	174	anti-parallel
Strand 3	F	202	207	parallel

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There are 3 strands in FD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	222	227	first strand
Strand 2	F	229	234	anti-parallel
Strand 3	F	266	270	parallel

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There are 2 strands in FE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	277	279	first strand
Strand 2	F	297	300	anti-parallel

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There are 3 strands in FF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	308	310	first strand
Strand 2	F	312	318	anti-parallel
Strand 3	F	339	344	parallel

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There are 4 strands in GA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	83	86	first strand
Strand 2	G	61	66	parallel
Strand 3	G	23	30	parallel
Strand 4	G	360	363	anti-parallel

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There are 5 strands in GB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	15	16	first strand
Strand 2	G	100	104	anti-parallel
Strand 3	G	108	113	anti-parallel
Strand 4	G	147	151	parallel
Strand 5	G	3	5	parallel

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There are 3 strands in GC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	161	163	first strand
Strand 2	G	167	174	anti-parallel
Strand 3	G	202	207	parallel

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There are 3 strands in GD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	222	227	first strand
Strand 2	G	229	234	anti-parallel
Strand 3	G	266	270	parallel

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There are 2 strands in GE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	277	279	first strand
Strand 2	G	297	300	anti-parallel

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There are 3 strands in GF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	308	310	first strand
Strand 2	G	312	318	anti-parallel
Strand 3	G	339	344	parallel

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There are 4 strands in HA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	83	86	first strand
Strand 2	H	61	66	parallel
Strand 3	H	23	30	parallel
Strand 4	H	360	363	anti-parallel

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There are 5 strands in HB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	15	16	first strand
Strand 2	H	100	104	anti-parallel
Strand 3	H	108	113	anti-parallel
Strand 4	H	147	151	parallel
Strand 5	H	3	5	parallel

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There are 3 strands in HC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	161	163	first strand
Strand 2	H	167	174	anti-parallel
Strand 3	H	202	207	parallel

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There are 3 strands in HD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	222	227	first strand
Strand 2	H	229	234	anti-parallel
Strand 3	H	266	270	parallel

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There are 2 strands in HE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	277	279	first strand
Strand 2	H	297	300	anti-parallel

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There are 3 strands in HF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	308	310	first strand
Strand 2	H	312	318	anti-parallel
Strand 3	H	339	344	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 2JER

Analysis of interatomic Contacts of Structural Units in PDB entry:
2JER