Analysis of interatomic Contacts of Structural Units in PDB entry:
2JF4


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JF4 entry

There is 1 chain in PDB entry 2JF4 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 37PRO 547
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2JF4. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 44Right-handed alpha
Helix 2
2
A
44 55Right-handed alpha
Helix 3
3
A
60 65Right-handed alpha
Helix 4
4
A
71 83Right-handed alpha
Helix 5
5
A
89 97Right-handed alpha
Helix 6
6
A
114 126Right-handed alpha
Helix 7
7
A
157 171Right-handed alpha
Helix 8
8
A
173 192Right-handed alpha
Helix 9
9
A
200 203Right-handed 310
Helix 10
10
A
210 223Right-handed alpha
Helix 11
11
A
223 230Right-handed alpha
Helix 12
12
A
230 242Right-handed alpha
Helix 13
13
A
277 279Right-handed 310
Helix 14
14
A
280 290Right-handed alpha
Helix 15
15
A
295 309Right-handed alpha
Helix 16
16
A
314 317Right-handed 310
Helix 17
17
A
323 326Right-handed 310
Helix 18
18
A
328 330Right-handed 310
Helix 19
19
A
334 356Right-handed alpha
Helix 20
20
A
357 379Right-handed alpha
Helix 21
21
A
403 405Right-handed 310
Helix 22
22
A
406 411Right-handed alpha
Helix 23
23
A
415 430Right-handed alpha
Helix 24
24
A
453 466Right-handed alpha
Helix 25
25
A
469 492Right-handed alpha
Helix 26
26
A
518 533Right-handed alpha
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There are 8 sheets in PDB entry 2JF4. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 68first strand
Strand 2
A
98 99anti-parallel
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There are 2 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
146 147anti-parallel
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There are 3 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
252 254first strand
Strand 2
A
257 259anti-parallel
Strand 3
A
265 267anti-parallel
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There are 3 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 333first strand
Strand 2
A
390 391anti-parallel
Strand 3
A
396 397anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
380 381first strand
Strand 2
A
386 387anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
431 432first strand
Strand 2
A
435 436anti-parallel
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There are 2 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 452first strand
Strand 2
A
498 499anti-parallel
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There are 2 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
494 495first strand
Strand 2
A
516 517anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il