Analysis of interatomic Contacts of Structural Units in PDB entry:
2JF7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JF7 entry

There are 2 chains in PDB entry 2JF7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 37LYS 509
B
 VAL 37LYS 509
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 2JF7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
39 43Right-handed 310
Helix 2
2
A
54 59Right-handed alpha
Helix 3
3
A
70 79Right-handed alpha
Helix 4
4
A
80 83Right-handed 310
Helix 5
5
A
94 110Right-handed alpha
Helix 6
6
A
119 124Right-handed alpha
Helix 7
7
A
134 151Right-handed alpha
Helix 8
8
A
165 173Right-handed alpha
Helix 9
9
A
174 178Right-handed 310
Helix 10
10
A
179 196Right-handed alpha
Helix 11
11
A
197 199Right-handed 310
Helix 12
12
A
207 217Right-handed alpha
Helix 13
13
A
236 260Right-handed alpha
Helix 14
14
A
260 265Right-handed alpha
Helix 15
15
A
283 298Right-handed alpha
Helix 16
16
A
298 303Right-handed alpha
Helix 17
17
A
303 308Right-handed alpha
Helix 18
18
A
311 319Right-handed alpha
Helix 19
19
A
320 322Right-handed 310
Helix 20
20
A
326 334Right-handed alpha
Helix 21
21
A
362 367Right-handed alpha
Helix 22
22
A
392 408Right-handed alpha
Helix 23
23
A
428 433Right-handed alpha
Helix 24
24
A
435 455Right-handed alpha
Helix 25
25
A
472 476Right-handed 310
Helix 26
26
A
496 508Right-handed alpha
Helix 27
27
B
39 43Right-handed 310
Helix 28
28
B
54 59Right-handed alpha
Helix 29
29
B
70 79Right-handed alpha
Helix 30
30
B
80 83Right-handed 310
Helix 31
31
B
94 110Right-handed alpha
Helix 32
32
B
119 124Right-handed alpha
Helix 33
33
B
134 151Right-handed alpha
Helix 34
34
B
165 173Right-handed alpha
Helix 35
35
B
174 178Right-handed 310
Helix 36
36
B
179 196Right-handed alpha
Helix 37
37
B
197 199Right-handed 310
Helix 38
38
B
207 217Right-handed alpha
Helix 39
39
B
236 260Right-handed alpha
Helix 40
40
B
260 265Right-handed alpha
Helix 41
41
B
283 298Right-handed alpha
Helix 42
42
B
298 303Right-handed alpha
Helix 43
43
B
303 308Right-handed alpha
Helix 44
44
B
311 319Right-handed alpha
Helix 45
45
B
320 322Right-handed 310
Helix 46
46
B
326 334Right-handed alpha
Helix 47
47
B
362 367Right-handed alpha
Helix 48
48
B
392 408Right-handed alpha
Helix 49
49
B
428 433Right-handed alpha
Helix 50
50
B
435 455Right-handed alpha
Helix 51
51
B
472 476Right-handed 310
Helix 52
52
B
496 508Right-handed alpha
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There are 10 sheets in PDB entry 2JF7. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, BA, BB, BC, BD, BE,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
459 465parallel
Strand 3
A
412 417parallel
Strand 4
A
340 343parallel
Strand 5
A
267 273parallel
Strand 6
A
201 206parallel
Strand 7
A
154 160parallel
Strand 8
A
113 117parallel
Strand 9
A
48 52parallel
Strand 10
A
48 52first strand
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
276 279first strand
Strand 2
A
347 352parallel
Strand 3
A
369 372anti-parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 383first strand
Strand 2
A
390 391anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 422first strand
Strand 2
A
479 480anti-parallel
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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
484 486first strand
Strand 2
A
493 495anti-parallel
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There are 9 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
B
459 465parallel
Strand 3
B
412 417parallel
Strand 4
B
340 344parallel
Strand 5
B
267 273parallel
Strand 6
B
201 206parallel
Strand 7
B
154 160parallel
Strand 8
B
113 117parallel
Strand 9
B
48 52parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
276 279first strand
Strand 2
B
347 352parallel
Strand 3
B
369 372anti-parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 383first strand
Strand 2
B
390 391anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
421 422first strand
Strand 2
B
479 480anti-parallel
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There are 2 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
484 486first strand
Strand 2
B
493 495anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il