Analysis of interatomic Contacts of Structural Units in PDB entry:
2JF9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JF9 entry

There are 6 chains in PDB entry 2JF9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 305MET 528
B
 SER 305LYS 529
C
 SER 305LYS 529
P
 SER 1SER 13
Q
 SER 1SER 13
R
 SER 1SER 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 2JF9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
305 310Right-handed alpha
Helix 2
2
A
311 322Right-handed alpha
Helix 3
3
A
338 364Right-handed alpha
Helix 4
4
A
366 370Right-handed 310
Helix 5
5
A
371 396Right-handed alpha
Helix 6
6
A
412 416Right-handed alpha
Helix 7
7
A
420 439Right-handed alpha
Helix 8
8
A
441 456Right-handed alpha
Helix 9
9
A
470 493Right-handed alpha
Helix 10
10
A
496 528Right-handed alpha
Helix 11
11
B
306 310Right-handed 310
Helix 12
12
B
311 322Right-handed alpha
Helix 13
13
B
341 363Right-handed alpha
Helix 14
14
B
366 370Right-handed 310
Helix 15
15
B
371 396Right-handed alpha
Helix 16
16
B
413 418Right-handed 310
Helix 17
17
B
420 439Right-handed alpha
Helix 18
18
B
441 456Right-handed alpha
Helix 19
19
B
469 493Right-handed alpha
Helix 20
20
B
496 529Right-handed alpha
Helix 21
21
C
305 310Right-handed 310
Helix 22
22
C
311 322Right-handed alpha
Helix 23
23
C
338 363Right-handed alpha
Helix 24
24
C
366 370Right-handed 310
Helix 25
25
C
371 395Right-handed alpha
Helix 26
26
C
412 416Right-handed alpha
Helix 27
27
C
420 438Right-handed alpha
Helix 28
28
C
441 456Right-handed alpha
Helix 29
29
C
473 493Right-handed alpha
Helix 30
30
C
496 529Right-handed alpha
Helix 31
31
P
4 13Right-handed alpha
Helix 32
32
Q
4 13Right-handed alpha
Helix 33
33
R
4 13Right-handed alpha
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There are 3 sheets in PDB entry 2JF9. Click on sheet of interest to get list of strands forming it: AA, BA, CA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 405first strand
Strand 2
B
408 411anti-parallel
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There are 2 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
401 405first strand
Strand 2
C
408 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il