Analysis of interatomic Contacts of Structural Units in PDB entry:
2JFA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JFA entry

There are 5 chains in PDB entry 2JFA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 305LYS 529
B
 LEU 306LYS 416
B
 VAL 418MET 528
P
 ASP 1ASP 15
Q
 ASP 1ASP 15
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 2JFA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
306 310Right-handed 310
Helix 2
2
A
311 322Right-handed alpha
Helix 3
3
A
338 364Right-handed alpha
Helix 4
4
A
366 370Right-handed 310
Helix 5
5
A
371 395Right-handed alpha
Helix 6
6
A
412 416Right-handed alpha
Helix 7
7
A
421 438Right-handed alpha
Helix 8
8
A
441 457Right-handed alpha
Helix 9
9
A
458 461Right-handed 310
Helix 10
10
A
465 493Right-handed alpha
Helix 11
11
A
496 527Right-handed alpha
Helix 12
12
B
306 310Right-handed 310
Helix 13
13
B
311 323Right-handed alpha
Helix 14
14
B
341 364Right-handed alpha
Helix 15
15
B
366 370Right-handed 310
Helix 16
16
B
371 395Right-handed alpha
Helix 17
17
B
413 418Right-handed 310
Helix 18
18
B
421 439Right-handed alpha
Helix 19
19
B
441 457Right-handed alpha
Helix 20
20
B
465 493Right-handed alpha
Helix 21
21
B
496 527Right-handed alpha
Helix 22
22
P
2 15Right-handed alpha
Helix 23
23
Q
2 15Right-handed alpha
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There are 2 sheets in PDB entry 2JFA. Click on sheet of interest to get list of strands forming it: AA, BA,

There are 2 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
401 405first strand
Strand 2
A
408 411anti-parallel
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There are 2 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
401 405first strand
Strand 2
B
408 411anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il