Analysis of interatomic Contacts of Structural Units in PDB entry:
2JFC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JFC entry

There are 6 chains in PDB entry 2JFC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2ARG 336
B
 ASP 2ARG 336
C
 ASP 2ARG 336
D
 ASP 2ARG 336
E
 ASP 2ARG 336
F
 ASP 2ARG 336
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 2JFC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
2 6Right-handed 310
Helix 2
2
A
98 106Right-handed 310
Helix 3
3
A
135 142Right-handed alpha
Helix 4
4
A
193 195Right-handed 310
Helix 5
5
A
196 205Right-handed alpha
Helix 6
6
A
222 226Right-handed 310
Helix 7
7
A
301 307Right-handed alpha
Helix 8
8
B
2 6Right-handed 310
Helix 9
9
B
98 106Right-handed 310
Helix 10
10
B
135 142Right-handed alpha
Helix 11
11
B
192 205Right-handed alpha
Helix 12
12
B
222 226Right-handed 310
Helix 13
13
B
301 307Right-handed alpha
Helix 14
14
C
98 106Right-handed 310
Helix 15
15
C
135 142Right-handed alpha
Helix 16
16
C
193 195Right-handed 310
Helix 17
17
C
196 206Right-handed alpha
Helix 18
18
C
222 226Right-handed 310
Helix 19
19
C
301 307Right-handed alpha
Helix 20
20
D
2 6Right-handed 310
Helix 21
21
D
98 106Right-handed 310
Helix 22
22
D
135 142Right-handed alpha
Helix 23
23
D
193 195Right-handed 310
Helix 24
24
D
196 205Right-handed alpha
Helix 25
25
D
222 226Right-handed 310
Helix 26
26
D
301 307Right-handed alpha
Helix 27
27
E
2 6Right-handed 310
Helix 28
28
E
98 106Right-handed 310
Helix 29
29
E
135 142Right-handed alpha
Helix 30
30
E
193 195Right-handed 310
Helix 31
31
E
196 205Right-handed alpha
Helix 32
32
E
222 226Right-handed 310
Helix 33
33
E
301 307Right-handed alpha
Helix 34
34
F
2 6Right-handed 310
Helix 35
35
F
98 106Right-handed 310
Helix 36
36
F
135 142Right-handed alpha
Helix 37
37
F
193 195Right-handed 310
Helix 38
38
F
196 206Right-handed alpha
Helix 39
39
F
222 226Right-handed 310
Helix 40
40
F
301 307Right-handed alpha
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There are 33 sheets in PDB entry 2JFC. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF, AG, AH, BA, BB, BC, BD, BE, BF, BG, CA, CB, CC, CD, CE, A, DB, C, DD, DE, EA, EB, EC, ED, FA, FB, FC, FD,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
32 45parallel
Strand 3
A
74 81parallel
Strand 4
A
112 119anti-parallel
Strand 5
E
325 333anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 10first strand
Strand 2
A
32 45parallel
Strand 3
A
52 58anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
67 70first strand
Strand 2
A
145 151parallel
Strand 3
A
124 129anti-parallel
Strand 4
A
92 93anti-parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
163 164anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 214first strand
Strand 2
A
168 177anti-parallel
Strand 3
A
234 241parallel
Strand 4
A
281 288anti-parallel
Strand 5
A
255 259anti-parallel
Strand 6
A
269 272anti-parallel
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There are 4 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 230first strand
Strand 2
A
311 317parallel
Strand 3
A
293 299anti-parallel
Strand 4
A
248 251anti-parallel
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There are 5 strands in AG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 333first strand
Strand 2
D
112 119anti-parallel
Strand 3
D
74 81anti-parallel
Strand 4
D
32 45parallel
Strand 5
D
8 10parallel
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There are 5 strands in AH sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 333first strand
Strand 2
D
112 119anti-parallel
Strand 3
D
74 81anti-parallel
Strand 4
D
32 45parallel
Strand 5
D
52 58anti-parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
32 45parallel
Strand 3
B
74 81parallel
Strand 4
B
112 119anti-parallel
Strand 5
F
325 333anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 10first strand
Strand 2
B
32 45parallel
Strand 3
B
52 58anti-parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
67 70first strand
Strand 2
B
145 151parallel
Strand 3
B
124 129anti-parallel
Strand 4
B
92 93anti-parallel
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There are 2 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
163 164anti-parallel
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There are 6 strands in BE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 214first strand
Strand 2
B
168 177anti-parallel
Strand 3
B
234 241parallel
Strand 4
B
281 288anti-parallel
Strand 5
B
255 259anti-parallel
Strand 6
B
269 272anti-parallel
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There are 4 strands in BF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 230first strand
Strand 2
B
311 317parallel
Strand 3
B
293 299anti-parallel
Strand 4
B
248 250anti-parallel
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There are 8 strands in BG sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 333first strand
Strand 2
C
112 119anti-parallel
Strand 3
C
74 81anti-parallel
Strand 4
C
32 45parallel
Strand 5
C
8 10parallel
Strand 6
C
32 45parallel
Strand 7
C
52 58anti-parallel
Strand 8
C
32 45anti-parallel
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There are 4 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
67 70first strand
Strand 2
C
145 151parallel
Strand 3
C
124 129anti-parallel
Strand 4
C
92 93anti-parallel
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There are 2 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 157first strand
Strand 2
C
163 164anti-parallel
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There are 6 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
211 214first strand
Strand 2
C
168 177anti-parallel
Strand 3
C
234 241parallel
Strand 4
C
281 288anti-parallel
Strand 5
C
255 259anti-parallel
Strand 6
C
269 272anti-parallel
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There are 4 strands in CD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
227 230first strand
Strand 2
C
311 317parallel
Strand 3
C
293 299anti-parallel
Strand 4
C
248 250anti-parallel
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There are 8 strands in CE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
325 333first strand
Strand 2
F
112 119anti-parallel
Strand 3
F
74 81anti-parallel
Strand 4
F
32 45parallel
Strand 5
F
8 10parallel
Strand 6
F
32 45parallel
Strand 7
F
52 58anti-parallel
Strand 8
F
32 45anti-parallel
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There are 4 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
67 70first strand
Strand 2
D
145 151parallel
Strand 3
D
124 129anti-parallel
Strand 4
D
92 93anti-parallel
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There are 2 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
156 157first strand
Strand 2
D
163 164anti-parallel
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There are 6 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
211 214first strand
Strand 2
D
168 177anti-parallel
Strand 3
D
234 241parallel
Strand 4
D
281 288anti-parallel
Strand 5
D
255 259anti-parallel
Strand 6
D
269 272anti-parallel
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There are 4 strands in DD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
227 230first strand
Strand 2
D
311 317parallel
Strand 3
D
293 299anti-parallel
Strand 4
D
248 250anti-parallel
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There are 8 strands in DE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
325 333first strand
Strand 2
E
112 119anti-parallel
Strand 3
E
74 81anti-parallel
Strand 4
E
32 45parallel
Strand 5
E
8 10parallel
Strand 6
E
32 45parallel
Strand 7
E
52 58anti-parallel
Strand 8
E
32 45anti-parallel
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There are 4 strands in EA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
67 70first strand
Strand 2
E
145 151parallel
Strand 3
E
124 129anti-parallel
Strand 4
E
92 93anti-parallel
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There are 2 strands in EB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
156 157first strand
Strand 2
E
163 164anti-parallel
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There are 6 strands in EC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
211 214first strand
Strand 2
E
168 177anti-parallel
Strand 3
E
234 241parallel
Strand 4
E
281 288anti-parallel
Strand 5
E
255 259anti-parallel
Strand 6
E
269 272anti-parallel
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There are 4 strands in ED sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
227 230first strand
Strand 2
E
311 317parallel
Strand 3
E
293 299anti-parallel
Strand 4
E
248 250anti-parallel
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There are 4 strands in FA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
67 70first strand
Strand 2
F
145 151parallel
Strand 3
F
124 129anti-parallel
Strand 4
F
92 93anti-parallel
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There are 2 strands in FB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
156 157first strand
Strand 2
F
163 164anti-parallel
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There are 6 strands in FC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
211 214first strand
Strand 2
F
168 177anti-parallel
Strand 3
F
234 241parallel
Strand 4
F
281 288anti-parallel
Strand 5
F
255 259anti-parallel
Strand 6
F
269 272anti-parallel
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There are 4 strands in FD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
227 230first strand
Strand 2
F
311 317parallel
Strand 3
F
293 299anti-parallel
Strand 4
F
248 251anti-parallel
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