Analysis of interatomic Contacts of Structural Units in PDB entry:
2JFD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JFD entry

There are 4 chains in PDB entry 2JFD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 419PRO 822
B
 SER 420PRO 822
C
 SER 420PRO 822
D
 GLN 419VAL 819
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 81 helices in PDB entry 2JFD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
430 443Right-handed alpha
Helix 2
2
A
447 458Right-handed alpha
Helix 3
3
A
508 512Right-handed 310
Helix 4
4
A
513 527Right-handed alpha
Helix 5
5
A
533 540Right-handed alpha
Helix 6
6
A
544 547Right-handed 310
Helix 7
7
A
548 570Right-handed alpha
Helix 8
8
A
582 591Right-handed alpha
Helix 9
9
A
595 614Right-handed alpha
Helix 10
10
A
626 634Right-handed alpha
Helix 11
11
A
655 668Right-handed alpha
Helix 12
12
A
684 689Right-handed 310
Helix 13
13
A
690 702Right-handed alpha
Helix 14
14
A
718 722Right-handed 310
Helix 15
15
A
724 729Right-handed alpha
Helix 16
16
A
731 741Right-handed alpha
Helix 17
17
A
744 750Right-handed alpha
Helix 18
18
A
767 774Right-handed alpha
Helix 19
19
A
791 806Right-handed alpha
Helix 20
20
A
811 816Right-handed 310
Helix 21
21
B
430 443Right-handed alpha
Helix 22
22
B
447 458Right-handed alpha
Helix 23
23
B
508 512Right-handed 310
Helix 24
24
B
513 527Right-handed alpha
Helix 25
25
B
533 540Right-handed alpha
Helix 26
26
B
544 547Right-handed 310
Helix 27
27
B
548 570Right-handed alpha
Helix 28
28
B
582 591Right-handed alpha
Helix 29
29
B
595 614Right-handed alpha
Helix 30
30
B
626 634Right-handed alpha
Helix 31
31
B
655 667Right-handed alpha
Helix 32
32
B
684 689Right-handed 310
Helix 33
33
B
690 702Right-handed alpha
Helix 34
34
B
718 722Right-handed 310
Helix 35
35
B
724 729Right-handed alpha
Helix 36
36
B
731 741Right-handed alpha
Helix 37
37
B
744 750Right-handed alpha
Helix 38
38
B
767 774Right-handed alpha
Helix 39
39
B
791 806Right-handed alpha
Helix 40
40
B
811 816Right-handed 310
Helix 41
41
C
430 443Right-handed alpha
Helix 42
42
C
447 458Right-handed alpha
Helix 43
43
C
508 512Right-handed 310
Helix 44
44
C
513 527Right-handed alpha
Helix 45
45
C
528 532Right-handed 310
Helix 46
46
C
533 540Right-handed alpha
Helix 47
47
C
544 547Right-handed 310
Helix 48
48
C
548 570Right-handed alpha
Helix 49
49
C
582 591Right-handed alpha
Helix 50
50
C
595 614Right-handed alpha
Helix 51
51
C
626 634Right-handed alpha
Helix 52
52
C
655 669Right-handed alpha
Helix 53
53
C
684 689Right-handed 310
Helix 54
54
C
690 702Right-handed alpha
Helix 55
55
C
718 722Right-handed 310
Helix 56
56
C
724 729Right-handed alpha
Helix 57
57
C
731 741Right-handed alpha
Helix 58
58
C
744 750Right-handed alpha
Helix 59
59
C
767 775Right-handed alpha
Helix 60
60
C
791 806Right-handed alpha
Helix 61
61
C
811 816Right-handed 310
Helix 62
62
D
430 443Right-handed alpha
Helix 63
63
D
447 458Right-handed alpha
Helix 64
64
D
508 512Right-handed 310
Helix 65
65
D
513 527Right-handed alpha
Helix 66
66
D
533 540Right-handed alpha
Helix 67
67
D
544 547Right-handed 310
Helix 68
68
D
548 570Right-handed alpha
Helix 69
69
D
582 592Right-handed alpha
Helix 70
70
D
595 614Right-handed alpha
Helix 71
71
D
626 634Right-handed alpha
Helix 72
72
D
655 669Right-handed alpha
Helix 73
73
D
684 689Right-handed 310
Helix 74
74
D
690 702Right-handed alpha
Helix 75
75
D
718 723Right-handed 310
Helix 76
76
D
724 729Right-handed alpha
Helix 77
77
D
731 741Right-handed alpha
Helix 78
78
D
744 750Right-handed alpha
Helix 79
79
D
767 775Right-handed alpha
Helix 80
80
D
791 806Right-handed alpha
Helix 81
81
D
811 816Right-handed 310
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There are 12 sheets in PDB entry 2JFD. Click on sheet of interest to get list of strands forming it: AA, AB, AC, BA, BB, BC, CA, CB, CC, A, DB, C,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
422 428first strand
Strand 2
A
467 473anti-parallel
Strand 3
A
481 484anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
576 579first strand
Strand 2
A
492 496parallel
Strand 3
A
757 761parallel
Strand 4
A
780 783parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
639 645first strand
Strand 2
A
648 654anti-parallel
Strand 3
A
618 623anti-parallel
Strand 4
A
672 675anti-parallel
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There are 3 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
422 428first strand
Strand 2
B
467 473anti-parallel
Strand 3
B
481 484anti-parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
576 579first strand
Strand 2
B
492 496parallel
Strand 3
B
757 761parallel
Strand 4
B
780 783parallel
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There are 4 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
639 645first strand
Strand 2
B
648 654anti-parallel
Strand 3
B
618 623anti-parallel
Strand 4
B
672 675anti-parallel
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There are 3 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
422 428first strand
Strand 2
C
467 473anti-parallel
Strand 3
C
481 484anti-parallel
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There are 4 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
576 579first strand
Strand 2
C
492 496parallel
Strand 3
C
757 761parallel
Strand 4
C
780 783parallel
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There are 4 strands in CC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
639 645first strand
Strand 2
C
648 654anti-parallel
Strand 3
C
618 623anti-parallel
Strand 4
C
672 674anti-parallel
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There are 3 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
422 428first strand
Strand 2
D
467 473anti-parallel
Strand 3
D
481 484anti-parallel
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There are 4 strands in DB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
576 579first strand
Strand 2
D
492 496parallel
Strand 3
D
757 761parallel
Strand 4
D
780 783parallel
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There are 4 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
639 645first strand
Strand 2
D
648 654anti-parallel
Strand 3
D
618 623anti-parallel
Strand 4
D
672 675anti-parallel
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