Analysis of interatomic Contacts of Structural Units in PDB entry:
2JFE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JFE entry

There is 1 chain in PDB entry 2JFE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
X
 PHE 3ARG 461
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 2JFE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
X
14 19Right-handed alpha
Helix 2
2
X
30 38Right-handed alpha
Helix 3
3
X
43 47Right-handed 310
Helix 4
4
X
58 70Right-handed alpha
Helix 5
5
X
79 84Right-handed alpha
Helix 6
6
X
93 110Right-handed alpha
Helix 7
7
X
124 130Right-handed alpha
Helix 8
8
X
131 135Right-handed 310
Helix 9
9
X
136 154Right-handed alpha
Helix 10
10
X
165 174Right-handed alpha
Helix 11
11
X
188 212Right-handed alpha
Helix 12
12
X
212 217Right-handed alpha
Helix 13
13
X
236 251Right-handed alpha
Helix 14
14
X
251 260Right-handed alpha
Helix 15
15
X
265 278Right-handed alpha
Helix 16
16
X
290 298Right-handed alpha
Helix 17
17
X
350 364Right-handed alpha
Helix 18
18
X
386 406Right-handed alpha
Helix 19
19
X
424 429Right-handed 310
Helix 20
20
X
450 460Right-handed alpha
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There are 4 sheets in PDB entry 2JFE. Click on sheet of interest to get list of strands forming it: XA, XB, XC, XD,

There are 9 strands in XA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
219 221first strand
Strand 2
X
159 163parallel
Strand 3
X
113 119parallel
Strand 4
X
73 77parallel
Strand 5
X
8 12parallel
Strand 6
X
411 416parallel
Strand 7
X
369 374parallel
Strand 8
X
304 316parallel
Strand 9
X
223 231parallel
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There are 9 strands in XB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
219 221first strand
Strand 2
X
159 163parallel
Strand 3
X
113 119parallel
Strand 4
X
73 77parallel
Strand 5
X
8 12parallel
Strand 6
X
411 416parallel
Strand 7
X
369 374parallel
Strand 8
X
304 316parallel
Strand 9
X
332 335anti-parallel
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There are 2 strands in XC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
378 379first strand
Strand 2
X
431 432anti-parallel
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There are 2 strands in XD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
X
436 438first strand
Strand 2
X
447 449anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il