Analysis of interatomic Contacts of Structural Units in PDB entry:
2JFN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JFN entry

There is 1 chain in PDB entry 2JFN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 20GLY 285
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2JFN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
32 44Right-handed alpha
Helix 2
2
A
64 83Right-handed alpha
Helix 3
3
A
92 107Right-handed alpha
Helix 4
4
A
117 125Right-handed alpha
Helix 5
5
A
137 140Right-handed 310
Helix 6
6
A
141 151Right-handed alpha
Helix 7
7
A
162 174Right-handed alpha
Helix 8
8
A
179 187Right-handed alpha
Helix 9
9
A
187 192Right-handed alpha
Helix 10
10
A
206 209Right-handed 310
Helix 11
11
A
210 218Right-handed alpha
Helix 12
12
A
227 242Right-handed alpha
Helix 13
13
A
260 265Right-handed alpha
Helix 14
14
A
266 273Right-handed alpha
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There are 3 sheets in PDB entry 2JFN. Click on sheet of interest to get list of strands forming it: AA, AB, AC,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
87 90parallel
Strand 3
A
21 28parallel
Strand 4
A
247 248anti-parallel
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There are 6 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 112first strand
Strand 2
A
87 90parallel
Strand 3
A
21 28parallel
Strand 4
A
48 53parallel
Strand 5
A
253 256parallel
Strand 6
A
277 280parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 161first strand
Strand 2
A
129 134parallel
Strand 3
A
199 202parallel
Strand 4
A
223 225parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il