Analysis of interatomic Contacts of Structural Units in PDB entry:
2JFP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JFP entry

There are 2 chains in PDB entry 2JFP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2GLY 269
B
 SER 2GLY 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2JFP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
16 27Right-handed alpha
Helix 2
2
A
38 41Right-handed 310
Helix 3
3
A
47 64Right-handed alpha
Helix 4
4
A
74 89Right-handed alpha
Helix 5
5
A
96 108Right-handed alpha
Helix 6
6
A
118 125Right-handed alpha
Helix 7
7
A
125 133Right-handed alpha
Helix 8
8
A
147 154Right-handed alpha
Helix 9
9
A
159 170Right-handed alpha
Helix 10
10
A
171 174Right-handed 310
Helix 11
11
A
187 190Right-handed 310
Helix 12
12
A
191 200Right-handed alpha
Helix 13
13
A
208 223Right-handed alpha
Helix 14
14
A
243 256Right-handed alpha
Helix 15
15
B
16 27Right-handed alpha
Helix 16
16
B
38 41Right-handed 310
Helix 17
17
B
47 64Right-handed alpha
Helix 18
18
B
74 89Right-handed alpha
Helix 19
19
B
96 108Right-handed alpha
Helix 20
20
B
118 125Right-handed alpha
Helix 21
21
B
125 133Right-handed alpha
Helix 22
22
B
147 154Right-handed alpha
Helix 23
23
B
159 171Right-handed alpha
Helix 24
24
B
172 174Right-handed 310
Helix 25
25
B
187 190Right-handed 310
Helix 26
26
B
191 199Right-handed alpha
Helix 27
27
B
208 223Right-handed alpha
Helix 28
28
B
243 256Right-handed alpha
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There are 4 sheets in PDB entry 2JFP. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 95first strand
Strand 2
A
69 72parallel
Strand 3
A
7 11parallel
Strand 4
A
32 36parallel
Strand 5
A
237 240parallel
Strand 6
A
263 264parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
139 144first strand
Strand 2
A
112 117parallel
Strand 3
A
180 183parallel
Strand 4
A
204 207parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 95first strand
Strand 2
B
69 72parallel
Strand 3
B
7 11parallel
Strand 4
B
32 36parallel
Strand 5
B
237 240parallel
Strand 6
B
262 264parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
139 144first strand
Strand 2
B
112 117parallel
Strand 3
B
180 183parallel
Strand 4
B
204 207parallel
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