Analysis of interatomic Contacts of Structural Units in PDB entry:
2JFQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JFQ entry

There are 2 chains in PDB entry 2JFQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 266
B
 MET 1ASP 266
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 26 helices in PDB entry 2JFQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
14 25Right-handed alpha
Helix 2
2
A
45 61Right-handed alpha
Helix 3
3
A
72 87Right-handed alpha
Helix 4
4
A
94 106Right-handed alpha
Helix 5
5
A
116 123Right-handed alpha
Helix 6
6
A
123 133Right-handed alpha
Helix 7
7
A
145 152Right-handed alpha
Helix 8
8
A
157 170Right-handed alpha
Helix 9
9
A
171 173Right-handed 310
Helix 10
10
A
186 189Right-handed 310
Helix 11
11
A
190 198Right-handed alpha
Helix 12
12
A
207 222Right-handed alpha
Helix 13
13
A
242 254Right-handed alpha
Helix 14
14
B
14 25Right-handed alpha
Helix 15
15
B
45 62Right-handed alpha
Helix 16
16
B
72 87Right-handed alpha
Helix 17
17
B
94 106Right-handed alpha
Helix 18
18
B
116 123Right-handed alpha
Helix 19
19
B
123 133Right-handed alpha
Helix 20
20
B
145 153Right-handed alpha
Helix 21
21
B
157 170Right-handed alpha
Helix 22
22
B
171 173Right-handed 310
Helix 23
23
B
186 189Right-handed 310
Helix 24
24
B
190 198Right-handed alpha
Helix 25
25
B
207 222Right-handed alpha
Helix 26
26
B
242 254Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 2JFQ. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
67 70parallel
Strand 3
A
5 9parallel
Strand 4
A
30 34parallel
Strand 5
A
235 238parallel
Strand 6
A
260 261parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 142first strand
Strand 2
A
110 115parallel
Strand 3
A
179 183parallel
Strand 4
A
203 206parallel
Back to list of sheets
Back to top of page

There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
90 93first strand
Strand 2
B
67 70parallel
Strand 3
B
5 9parallel
Strand 4
B
30 34parallel
Strand 5
B
235 238parallel
Strand 6
B
260 261parallel
Back to list of sheets
Back to top of page

There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 142first strand
Strand 2
B
110 115parallel
Strand 3
B
179 183parallel
Strand 4
B
203 206parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il