Analysis of interatomic Contacts of Structural Units in PDB entry:
2JFV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JFV entry

There is 1 chain in PDB entry 2JFV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 271
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 2JFV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
19 30Right-handed alpha
Helix 2
2
A
50 68Right-handed alpha
Helix 3
3
A
77 84Right-handed alpha
Helix 4
4
A
84 92Right-handed alpha
Helix 5
5
A
99 111Right-handed alpha
Helix 6
6
A
121 128Right-handed alpha
Helix 7
7
A
128 138Right-handed alpha
Helix 8
8
A
150 157Right-handed alpha
Helix 9
9
A
162 174Right-handed alpha
Helix 10
10
A
175 177Right-handed 310
Helix 11
11
A
190 193Right-handed 310
Helix 12
12
A
194 203Right-handed alpha
Helix 13
13
A
211 226Right-handed alpha
Helix 14
14
A
246 259Right-handed alpha
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There are 2 sheets in PDB entry 2JFV. Click on sheet of interest to get list of strands forming it: AA, AB,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 97first strand
Strand 2
A
72 75parallel
Strand 3
A
10 14parallel
Strand 4
A
35 39parallel
Strand 5
A
239 243parallel
Strand 6
A
264 267parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 147first strand
Strand 2
A
115 120parallel
Strand 3
A
183 186parallel
Strand 4
A
207 210parallel
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