Analysis of interatomic Contacts of Structural Units in PDB entry:
2JFX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JFX entry

There are 2 chains in PDB entry 2JFX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 255
B
 MET 1LEU 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2JFX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
43 59Right-handed alpha
Helix 3
3
A
70 77Right-handed alpha
Helix 4
3
A
77 84Right-handed alpha
Helix 5
4
A
93 104Right-handed alpha
Helix 6
5
A
116 123Right-handed alpha
Helix 7
6
A
123 132Right-handed alpha
Helix 8
7
A
144 151Right-handed alpha
Helix 9
8
A
156 168Right-handed alpha
Helix 10
9
A
183 186Right-handed 310
Helix 11
10
A
187 199Right-handed alpha
Helix 12
11
A
210 222Right-handed alpha
Helix 13
12
A
241 253Right-handed alpha
Helix 14
13
B
12 23Right-handed alpha
Helix 15
14
B
43 59Right-handed alpha
Helix 16
15
B
70 77Right-handed alpha
Helix 17
15
B
77 84Right-handed alpha
Helix 18
16
B
93 104Right-handed alpha
Helix 19
17
B
116 123Right-handed alpha
Helix 20
18
B
123 132Right-handed alpha
Helix 21
19
B
144 151Right-handed alpha
Helix 22
20
B
156 168Right-handed alpha
Helix 23
21
B
183 186Right-handed 310
Helix 24
22
B
187 199Right-handed alpha
Helix 25
23
B
210 222Right-handed alpha
Helix 26
24
B
241 253Right-handed alpha
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There are 4 sheets in PDB entry 2JFX. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 90first strand
Strand 2
A
65 68parallel
Strand 3
A
2 7parallel
Strand 4
A
27 32parallel
Strand 5
A
233 238parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 141first strand
Strand 2
A
111 115parallel
Strand 3
A
176 179parallel
Strand 4
A
206 209parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 90first strand
Strand 2
B
65 68parallel
Strand 3
B
3 7parallel
Strand 4
B
27 32parallel
Strand 5
B
233 238parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 141first strand
Strand 2
B
111 115parallel
Strand 3
B
176 179parallel
Strand 4
B
206 209parallel
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