Analysis of interatomic Contacts of Structural Units in PDB entry:
2JFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JFY entry

There are 2 chains in PDB entry 2JFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 255
B
 MET 1LEU 255
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 2JFY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
12 23Right-handed alpha
Helix 2
2
A
43 59Right-handed alpha
Helix 3
3
A
60 62Right-handed 310
Helix 4
4
A
70 77Right-handed alpha
Helix 5
5
A
77 84Right-handed alpha
Helix 6
6
A
93 104Right-handed alpha
Helix 7
7
A
116 123Right-handed alpha
Helix 8
8
A
123 132Right-handed alpha
Helix 9
9
A
144 151Right-handed alpha
Helix 10
10
A
156 168Right-handed alpha
Helix 11
11
A
183 186Right-handed 310
Helix 12
12
A
187 199Right-handed alpha
Helix 13
13
A
210 222Right-handed alpha
Helix 14
14
A
241 254Right-handed alpha
Helix 15
15
B
12 23Right-handed alpha
Helix 16
16
B
43 59Right-handed alpha
Helix 17
17
B
60 62Right-handed 310
Helix 18
18
B
70 77Right-handed alpha
Helix 19
18
B
77 84Right-handed alpha
Helix 20
19
B
93 104Right-handed alpha
Helix 21
20
B
116 123Right-handed alpha
Helix 22
21
B
123 132Right-handed alpha
Helix 23
22
B
144 151Right-handed alpha
Helix 24
23
B
156 168Right-handed alpha
Helix 25
24
B
183 186Right-handed 310
Helix 26
25
B
187 199Right-handed alpha
Helix 27
26
B
210 222Right-handed alpha
Helix 28
27
B
241 254Right-handed alpha
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There are 4 sheets in PDB entry 2JFY. Click on sheet of interest to get list of strands forming it: AA, AB, BA, BB,

There are 5 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
89 91first strand
Strand 2
A
66 68parallel
Strand 3
A
2 7parallel
Strand 4
A
27 32parallel
Strand 5
A
233 238parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
137 141first strand
Strand 2
A
111 115parallel
Strand 3
A
176 180parallel
Strand 4
A
206 209parallel
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There are 5 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
89 91first strand
Strand 2
B
65 68parallel
Strand 3
B
2 7parallel
Strand 4
B
27 32parallel
Strand 5
B
233 238parallel
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There are 4 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 141first strand
Strand 2
B
111 115parallel
Strand 3
B
176 179parallel
Strand 4
B
206 209parallel
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