Analysis of interatomic Contacts of Structural Units in PDB entry:
2JGN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JGN entry

There are 3 chains in PDB entry 2JGN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 410TYR 575
B
 GLY 408TYR 575
C
 SER 411ALA 574
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2JGN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
422 424Right-handed 310
Helix 2
2
A
425 437Right-handed alpha
Helix 3
3
A
449 463Right-handed alpha
Helix 4
4
A
480 488Right-handed alpha
Helix 5
5
A
520 529Right-handed alpha
Helix 6
6
A
545 550Right-handed 310
Helix 7
7
A
551 562Right-handed alpha
Helix 8
8
A
567 575Right-handed alpha
Helix 9
9
B
422 424Right-handed 310
Helix 10
10
B
425 438Right-handed alpha
Helix 11
11
B
449 463Right-handed alpha
Helix 12
12
B
475 488Right-handed alpha
Helix 13
13
B
520 529Right-handed alpha
Helix 14
14
B
545 550Right-handed 310
Helix 15
15
B
551 562Right-handed alpha
Helix 16
16
B
567 575Right-handed alpha
Helix 17
17
C
422 424Right-handed 310
Helix 18
18
C
425 435Right-handed alpha
Helix 19
19
C
449 463Right-handed alpha
Helix 20
20
C
479 488Right-handed alpha
Helix 21
21
C
520 529Right-handed alpha
Helix 22
22
C
545 550Right-handed 310
Helix 23
23
C
551 562Right-handed alpha
Helix 24
24
C
567 574Right-handed alpha
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There are 3 sheets in PDB entry 2JGN. Click on sheet of interest to get list of strands forming it: AA, BA, CA,

There are 6 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
414 420first strand
Strand 2
A
538 544parallel
Strand 3
A
511 514parallel
Strand 4
A
443 447parallel
Strand 5
A
493 497parallel
Strand 6
A
467 470parallel
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There are 6 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 420first strand
Strand 2
B
538 544parallel
Strand 3
B
511 514parallel
Strand 4
B
443 447parallel
Strand 5
B
493 497parallel
Strand 6
B
467 470parallel
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There are 6 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
414 420first strand
Strand 2
C
538 544parallel
Strand 3
C
511 514parallel
Strand 4
C
443 447parallel
Strand 5
C
493 497parallel
Strand 6
C
467 470parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il