Analysis of interatomic Contacts of Structural Units in PDB entry:
2JGP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JGP entry

There is 1 chain in PDB entry 2JGP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 3LEU 522
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 2JGP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
11 26Right-handed alpha
Helix 2
2
A
42 58Right-handed alpha
Helix 3
3
A
62 69Right-handed alpha
Helix 4
4
A
71 82Right-handed alpha
Helix 5
5
A
102 115Right-handed alpha
Helix 6
6
A
134 149Right-handed alpha
Helix 7
7
A
150 152Right-handed 310
Helix 8
8
A
181 192Right-handed alpha
Helix 9
9
A
224 227Right-handed 310
Helix 10
10
A
228 244Right-handed alpha
Helix 11
11
A
254 266Right-handed alpha
Helix 12
12
A
268 282Right-handed alpha
Helix 13
13
A
313 328Right-handed alpha
Helix 14
14
A
330 348Right-handed alpha
Helix 15
15
A
363 367Right-handed 310
Helix 16
16
A
388 406Right-handed alpha
Helix 17
17
A
410 418Right-handed alpha
Helix 18
18
A
490 511Right-handed alpha
Helix 19
19
A
516 519Right-handed 310
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There are 4 sheets in PDB entry 2JGP. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
99 100first strand
Strand 2
A
162 167anti-parallel
Strand 3
A
154 159anti-parallel
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There are 5 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 179first strand
Strand 2
A
204 212parallel
Strand 3
A
215 222anti-parallel
Strand 4
A
125 131anti-parallel
Strand 5
A
449 453anti-parallel
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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
305 311first strand
Strand 2
A
478 485anti-parallel
Strand 3
A
467 473anti-parallel
Strand 4
A
432 437parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 358first strand
Strand 2
A
375 381anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il