Analysis of interatomic Contacts of Structural Units in PDB entry:
2JGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JGS entry

There are 4 chains in PDB entry 2JGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4THR 130
B
 GLY 1THR 130
C
 GLU 4THR 130
D
 GLU 4THR 130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 2JGS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
63 69Right-handed 310
Helix 2
2
B
63 69Right-handed 310
Helix 3
3
C
63 69Right-handed 310
Helix 4
4
D
63 69Right-handed 310
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There are 4 sheets in PDB entry 2JGS. Click on sheet of interest to get list of strands forming it: AA, BA, CA, DA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5 11first strand
Strand 2
A
120 126anti-parallel
Strand 3
A
109 112anti-parallel
Strand 4
A
100 103anti-parallel
Strand 5
A
71 79anti-parallel
Strand 6
A
49 58anti-parallel
Strand 7
A
34 43anti-parallel
Strand 8
A
21 27anti-parallel
Strand 9
A
5 11anti-parallel
Strand 10
A
5 11first strand
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
5 12first strand
Strand 2
B
120 126anti-parallel
Strand 3
B
109 112anti-parallel
Strand 4
B
100 103anti-parallel
Strand 5
B
71 80anti-parallel
Strand 6
B
49 58anti-parallel
Strand 7
B
34 43anti-parallel
Strand 8
B
21 27anti-parallel
Strand 9
B
5 12anti-parallel
Strand 10
B
5 12first strand
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There are 22 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
5 11first strand
Strand 2
C
120 126anti-parallel
Strand 3
C
109 112anti-parallel
Strand 4
C
100 103anti-parallel
Strand 5
C
71 79anti-parallel
Strand 6
C
49 58anti-parallel
Strand 7
C
34 43anti-parallel
Strand 8
C
21 27anti-parallel
Strand 9
C
21 27first strand
Strand 10
C
5 11anti-parallel
Strand 11
C
34 43first strand
Strand 12
C
21 27anti-parallel
Strand 13
C
49 58first strand
Strand 14
C
34 43anti-parallel
Strand 15
C
71 79first strand
Strand 16
C
49 58anti-parallel
Strand 17
C
100 103first strand
Strand 18
C
71 79anti-parallel
Strand 19
C
109 112first strand
Strand 20
C
100 103anti-parallel
Strand 21
C
120 126first strand
Strand 22
C
5 11anti-parallel
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There are 16 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
5 11first strand
Strand 2
D
120 126anti-parallel
Strand 3
D
21 27first strand
Strand 4
D
5 11anti-parallel
Strand 5
D
34 43first strand
Strand 6
D
21 27anti-parallel
Strand 7
D
49 58first strand
Strand 8
D
34 43anti-parallel
Strand 9
D
71 80first strand
Strand 10
D
49 58anti-parallel
Strand 11
D
100 103first strand
Strand 12
D
71 80anti-parallel
Strand 13
D
109 112first strand
Strand 14
D
100 103anti-parallel
Strand 15
D
120 126first strand
Strand 16
D
5 11anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il