Analysis of interatomic Contacts of Structural Units in PDB entry:
2JGT


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JGT entry

There are 2 chains in PDB entry 2JGT (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 45ILE 419
B
 GLU 45ILE 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 2JGT. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
77 80Right-handed 310
Helix 2
2
A
81 96Right-handed alpha
Helix 3
3
A
109 124Right-handed alpha
Helix 4
4
A
134 139Right-handed alpha
Helix 5
5
A
139 146Right-handed alpha
Helix 6
6
A
180 190Right-handed alpha
Helix 7
7
A
213 223Right-handed alpha
Helix 8
8
A
245 250Right-handed alpha
Helix 9
9
A
282 287Right-handed 310
Helix 10
10
A
298 312Right-handed alpha
Helix 11
11
A
315 335Right-handed alpha
Helix 12
12
A
356 371Right-handed alpha
Helix 13
13
A
398 417Right-handed alpha
Helix 14
14
B
77 80Right-handed 310
Helix 15
15
B
81 96Right-handed alpha
Helix 16
16
B
112 124Right-handed alpha
Helix 17
17
B
133 139Right-handed alpha
Helix 18
18
B
139 146Right-handed alpha
Helix 19
19
B
180 189Right-handed alpha
Helix 20
20
B
213 223Right-handed alpha
Helix 21
21
B
245 250Right-handed alpha
Helix 22
22
B
282 287Right-handed 310
Helix 23
23
B
298 312Right-handed alpha
Helix 24
24
B
315 335Right-handed alpha
Helix 25
25
B
356 371Right-handed alpha
Helix 26
26
B
398 417Right-handed alpha
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There are 8 sheets in PDB entry 2JGT. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD,

There are 4 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 54first strand
Strand 2
A
59 62anti-parallel
Strand 3
A
65 69anti-parallel
Strand 4
A
372 373parallel
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There are 7 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 131first strand
Strand 2
A
272 276anti-parallel
Strand 3
A
258 262anti-parallel
Strand 4
A
227 231parallel
Strand 5
A
197 202parallel
Strand 6
A
150 155parallel
Strand 7
A
171 176parallel
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There are 2 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
204 205first strand
Strand 2
A
210 211anti-parallel
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There are 4 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 340first strand
Strand 2
A
349 354anti-parallel
Strand 3
A
387 392anti-parallel
Strand 4
A
375 377anti-parallel
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There are 4 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 54first strand
Strand 2
B
59 62anti-parallel
Strand 3
B
65 69anti-parallel
Strand 4
B
372 373parallel
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There are 7 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
127 131first strand
Strand 2
B
272 276anti-parallel
Strand 3
B
258 262anti-parallel
Strand 4
B
227 231parallel
Strand 5
B
197 202parallel
Strand 6
B
151 155parallel
Strand 7
B
172 176parallel
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There are 2 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
204 205first strand
Strand 2
B
210 211anti-parallel
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There are 4 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
339 340first strand
Strand 2
B
349 354anti-parallel
Strand 3
B
387 392anti-parallel
Strand 4
B
375 377anti-parallel
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