Analysis of interatomic Contacts of Structural Units in PDB entry:
2JGU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JGU entry

There is 1 chain in PDB entry 2JGU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1TYR 758
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 2JGU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
44 50Right-handed 310
Helix 2
2
A
96 102Right-handed alpha
Helix 3
3
A
115 124Right-handed alpha
Helix 4
4
A
186 202Right-handed alpha
Helix 5
5
A
214 222Right-handed alpha
Helix 6
6
A
260 265Right-handed alpha
Helix 7
7
A
274 284Right-handed alpha
Helix 8
8
A
293 297Right-handed 310
Helix 9
9
A
304 338Right-handed alpha
Helix 10
10
A
340 345Right-handed alpha
Helix 11
11
A
348 364Right-handed alpha
Helix 12
12
A
373 381Right-handed alpha
Helix 13
13
A
408 417Right-handed alpha
Helix 14
14
A
420 423Right-handed 310
Helix 15
15
A
448 469Right-handed alpha
Helix 16
16
A
473 493Right-handed alpha
Helix 17
17
A
493 499Right-handed alpha
Helix 18
18
A
507 531Right-handed alpha
Helix 19
19
A
556 570Right-handed alpha
Helix 20
20
A
617 633Right-handed alpha
Helix 21
21
A
636 649Right-handed alpha
Helix 22
22
A
1 736Right-handed alpha
Helix 23
23
A
737 748Right-handed alpha
Helix 24
24
A
752 757Right-handed alpha
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There are 6 sheets in PDB entry 2JGU. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, AE, AF,

There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 9first strand
Strand 2
A
14 21anti-parallel
Strand 3
A
26 31anti-parallel
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There are 4 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 75first strand
Strand 2
A
78 86anti-parallel
Strand 3
A
37 42anti-parallel
Strand 4
A
106 110anti-parallel
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There are 6 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 183first strand
Strand 2
A
168 172parallel
Strand 3
A
159 163anti-parallel
Strand 4
A
137 143anti-parallel
Strand 5
A
205 208parallel
Strand 6
A
256 259parallel
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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 243first strand
Strand 2
A
248 251anti-parallel
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There are 6 strands in AE sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
536 541first strand
Strand 2
A
544 548anti-parallel
Strand 3
A
398 406anti-parallel
Strand 4
A
578 591anti-parallel
Strand 5
A
594 599anti-parallel
Strand 6
A
604 607anti-parallel
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There are 2 strands in AF sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 434first strand
Strand 2
A
441 443anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il