Analysis of interatomic Contacts of Structural Units in PDB entry:
2JGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 2JGV entry

There are 4 chains in PDB entry 2JGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -4VAL 310
B
 ARG -3VAL 310
C
 HIS 0VAL 310
D
 HIS 0VAL 310
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 2JGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
1
A
37 50Right-handed alpha
Helix 2
2
A
61 74Right-handed alpha
Helix 3
3
A
110 125Right-handed alpha
Helix 4
4
A
126 128Right-handed 310
Helix 5
5
A
144 156Right-handed alpha
Helix 6
6
A
165 174Right-handed alpha
Helix 7
7
A
185 194Right-handed alpha
Helix 8
8
A
200 209Right-handed alpha
Helix 9
9
A
210 214Right-handed 310
Helix 10
10
A
224 226Right-handed 310
Helix 11
11
A
251 266Right-handed alpha
Helix 12
12
A
269 286Right-handed alpha
Helix 13
13
A
294 296Right-handed 310
Helix 14
14
A
297 303Right-handed alpha
Helix 15
15
B
37 50Right-handed alpha
Helix 16
16
B
61 74Right-handed alpha
Helix 17
17
B
110 126Right-handed alpha
Helix 18
18
B
144 156Right-handed alpha
Helix 19
19
B
165 175Right-handed alpha
Helix 20
20
B
185 194Right-handed alpha
Helix 21
21
B
200 209Right-handed alpha
Helix 22
22
B
210 214Right-handed 310
Helix 23
23
B
224 226Right-handed 310
Helix 24
24
B
251 266Right-handed alpha
Helix 25
25
B
269 286Right-handed alpha
Helix 26
26
B
294 296Right-handed 310
Helix 27
27
B
297 303Right-handed alpha
Helix 28
28
C
37 50Right-handed alpha
Helix 29
29
C
61 74Right-handed alpha
Helix 30
30
C
110 126Right-handed alpha
Helix 31
31
C
144 156Right-handed alpha
Helix 32
32
C
165 174Right-handed alpha
Helix 33
33
C
185 194Right-handed alpha
Helix 34
34
C
200 210Right-handed alpha
Helix 35
35
C
211 214Right-handed 310
Helix 36
36
C
251 266Right-handed alpha
Helix 37
37
C
269 286Right-handed alpha
Helix 38
38
C
294 296Right-handed 310
Helix 39
39
C
297 303Right-handed alpha
Helix 40
40
D
37 50Right-handed alpha
Helix 41
41
D
60 74Right-handed alpha
Helix 42
42
D
110 126Right-handed alpha
Helix 43
43
D
144 157Right-handed alpha
Helix 44
44
D
166 174Right-handed alpha
Helix 45
45
D
185 193Right-handed alpha
Helix 46
46
D
200 210Right-handed alpha
Helix 47
47
D
211 214Right-handed 310
Helix 48
48
D
224 226Right-handed 310
Helix 49
49
D
251 266Right-handed alpha
Helix 50
50
D
269 287Right-handed alpha
Helix 51
51
D
294 296Right-handed 310
Helix 52
52
D
297 303Right-handed alpha
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There are 11 sheets in PDB entry 2JGV. Click on sheet of interest to get list of strands forming it: AA, AB, AC, AD, BA, BB, BC, BD, CA, CB, DA,

There are 10 strands in AA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
53 60parallel
Strand 3
A
2 6parallel
Strand 4
A
130 134parallel
Strand 5
A
160 163parallel
Strand 6
A
181 182parallel
Strand 7
A
218 222parallel
Strand 8
A
228 232anti-parallel
Strand 9
A
235 240anti-parallel
Strand 10
A
306 310anti-parallel
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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
77 78first strand
Strand 2
A
53 60parallel
Strand 3
A
81 83parallel
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There are 5 strands in AC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 36first strand
Strand 2
A
10 17anti-parallel
Strand 3
A
88 95parallel
Strand 4
A
98 104anti-parallel
Strand 5
D
25 28parallel
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There are 5 strands in AD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
25 28first strand
Strand 2
D
98 104parallel
Strand 3
D
88 95anti-parallel
Strand 4
D
10 17parallel
Strand 5
D
32 36anti-parallel
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There are 10 strands in BA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
53 60parallel
Strand 3
B
2 6parallel
Strand 4
B
130 134parallel
Strand 5
B
160 163parallel
Strand 6
B
181 182parallel
Strand 7
B
218 222parallel
Strand 8
B
228 232anti-parallel
Strand 9
B
235 240anti-parallel
Strand 10
B
306 309anti-parallel
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There are 3 strands in BB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
77 78first strand
Strand 2
B
53 60parallel
Strand 3
B
81 83parallel
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There are 5 strands in BC sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 36first strand
Strand 2
B
10 17anti-parallel
Strand 3
B
88 95parallel
Strand 4
B
98 104anti-parallel
Strand 5
C
25 28parallel
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There are 5 strands in BD sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
25 28first strand
Strand 2
C
98 104parallel
Strand 3
C
88 95anti-parallel
Strand 4
C
10 17parallel
Strand 5
C
32 36anti-parallel
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There are 10 strands in CA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
C
53 60parallel
Strand 3
C
2 6parallel
Strand 4
C
130 134parallel
Strand 5
C
160 163parallel
Strand 6
C
181 182parallel
Strand 7
C
218 224parallel
Strand 8
C
227 232anti-parallel
Strand 9
C
235 240anti-parallel
Strand 10
C
306 309anti-parallel
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There are 3 strands in CB sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
77 78first strand
Strand 2
C
53 60parallel
Strand 3
C
81 83parallel
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There are 13 strands in DA sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
77 78first strand
Strand 2
D
53 59parallel
Strand 3
D
81 82parallel
Strand 4
D
53 59parallel
Strand 5
D
306 308first strand
Strand 6
D
235 240anti-parallel
Strand 7
D
228 232anti-parallel
Strand 8
D
218 222anti-parallel
Strand 9
D
181 182parallel
Strand 10
D
160 163parallel
Strand 11
D
130 134parallel
Strand 12
D
2 6parallel
Strand 13
D
53 59parallel
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